Carica papaya (papaya): 110821629
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Entry
110821629 CDS
T05151
Name
(RefSeq) LOW QUALITY PROTEIN: poly(A)-specific ribonuclease PARN-like
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
cpap
Carica papaya (papaya)
Pathway
cpap03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cpap00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
110821629
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpap03019
]
110821629
Enzymes [BR:
cpap01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
110821629
Messenger RNA biogenesis [BR:
cpap03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
110821629
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
110821629
NCBI-ProteinID:
XP_021907235
LinkDB
All DBs
Position
Unknown
AA seq
622 aa
AA seq
DB search
MCNFLFGGKMSPFLLHRRLLSSSSPSSSSTKNYYNKWNIKQVSKSNFSDSLEEIRSHIYS
SDFVAVFLQNTGSSSASWHRVSPFDTPYTAYLKAKYAADRFQILQFAVCPFSVRESKLTA
YPYNFHLFPRDELKLGMPSYSFSCQASYLTAMAREGFDFNTCIYDGISYLSRVQESAAKS
RLGNPIPISTVMKSSPSPSVADSLFMQRIKLRVQHWKKACTDSRMKTDEALVKSLRXLVL
GIEEYGSRPCMTIDVCSENQVQLALEILSEFSDDLVPLLIPSKGGGTQAVRVVLTSSKED
RNLFEKELQNLDVEQNKRVRGFREVIDLISASQKPVVSLNSLNDFTFIYSKFVAPLPLSM
DEFVSSLQSVFPHIIDVNQMMKEINPLKKVKNISTAMSYLKNRFSAAVDMEIRSQATVNE
GKIHGHNVVLICQFFTKLCFLLKITPNSVQASAECMKEYAKVFNLCLTSSEELLDDRDVK
VWTSNTRKVSCENLVFLWGFRSGISAGMLKSLLQGSHEVFSNEFDVRLVDKSCAIVVFWQ
SILSETLLHLLNSEELSGFLREMVADGLRAXSYETYQRACELSLFGADLADSLDKTLEDP
PDCFFEKNPEMSHQSFVGAVSQ
NT seq
1869 nt
NT seq
+upstream
nt +downstream
nt
atgtgcaattttctttttggaggcaaaatgtctccatttttgctgcacagacgtcttctt
tcttcttcttctccttcctcctcttctacgaaaaactactataacaaatggaacatcaag
caagtcagtaagtccaacttcagcgactccctcgaagaaattaggtcccacatttattct
tccgacttcgtcgccgttttcctccagaacaccggctcctcctctgcctcgtggcaccgc
gtttcccctttcgacaccccctacacagcttacctgaaagccaagtacgccgcggaccgc
ttccagatcctccagttcgctgtctgccccttctccgttcgggaatccaaactcaccgct
tatccgtataattttcatttatttccaagggatgaattgaagttagggatgccgtcttat
agcttttcatgtcaagcctcgtacttgacggccatggctagggaaggctttgattttaat
acctgcatctatgatggaatatcatacttatctagagtgcaggagtctgcggcaaaatct
cgtttaggaaatccaattcccattagtacagtgatgaaatcttctccttctcctagtgtt
gctgattcacttttcatgcaaaggatcaaattacgcgttcagcattggaaaaaagcttgt
acagactccagaatgaagacagatgaggctcttgtcaaatctttgaggnatcttgtcttg
ggaattgaggagtatggatcaaggccgtgcatgactattgatgtttgcagtgagaatcaa
gtgcaacttgctttagagattttgtcagagttctctgatgaccttgttcctttattaatc
ccttccaaaggcggaggaacccaggcagtccgtgttgttttgacaagttcaaaggaggac
aggaatctttttgagaaggagcttcagaatcttgacgttgaacaaaataaaagagtccgt
ggttttcgagaggtgatcgatttgatttctgcttcacagaaacctgttgtctccctcaat
tcccttaatgactttacttttatttattccaaattcgttgctcccctacctctgagcatg
gatgaatttgtcagttcgctgcaatcagtttttccacacataattgatgtcaaccagatg
atgaaagaaattaatcctctaaaaaaagtgaaaaatatatctacagccatgtcatacctg
aagaatcgattctctgcagcagttgatatggaaattcgaagccaagctacagtgaatgaa
gggaagattcatgggcataacgtggtactgatatgtcagttcttcacaaaactatgcttc
ctattgaaaatcactccaaattctgtccaggcgagtgctgaatgtatgaaagagtatgcc
aaagtatttaatctatgccttacgagttcagaggagttacttgatgatcgagatgtcaaa
gtctggactagcaacaccaggaaagtgagctgtgaaaatctagttttcctatggggattt
aggagtgggatatcagctggaatgctgaagagcctgcttcaaggttcccatgaagtcttc
tcaaatgaatttgatgttcgcttagtggataagagctgtgccattgtagttttctggcaa
tctattttgtctgaaaccttgttgcatttacttaacagtgaagaacttagtggatttcta
agagagatggttgcagatgggctgagagcangcagttatgaaacttaccagagagcctgt
gaattgagtttattcggagcagatttagcagattcattggacaaaaccttggaagacccc
ccagactgcttcttcgagaaaaatcctgaaatgagccatcagagttttgttggtgcagtg
agtcagtga
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