Carica papaya (papaya): 110822667
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Entry
110822667 CDS
T05151
Name
(RefSeq) polyadenylation and cleavage factor homolog 4
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
cpap
Carica papaya (papaya)
Pathway
cpap03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cpap00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
110822667
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cpap03021
]
110822667
03019 Messenger RNA biogenesis [BR:
cpap03019
]
110822667
Transcription machinery [BR:
cpap03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
110822667
Messenger RNA biogenesis [BR:
cpap03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
110822667
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf_PCFS4
CID
zf-H2C2_5
zf-C2H2_4
Motif
Other DBs
NCBI-GeneID:
110822667
NCBI-ProteinID:
XP_021908530
LinkDB
All DBs
Position
Unknown
AA seq
1106 aa
AA seq
DB search
MLTGMENSRRPFDRSRDPGLLKKPRLAEEPVRAANPSGRPFAQRPVAAVTAPASRFRVSN
DREAENNDSSRGGYQPQPVVQQHQELVSQYKTALSELTFNSKPIITNLTIIAGENLHAAK
AVAATVCANILEVPSEQKLPSLYLLDSIVKNIGRDYIKYFAARLYEVFCKAYRQVDSSVH
PSMRHLFGTWKGVFPPQTLQMIEKELGFSPLVNGSSSGAPTSRSDSQSQRIHFFFFVIKA
KGMTNDLTGAMASSTEDTERPDRTSSVNVGRPWMDLPAKVNNIQRSRRDAPNDPMHDKNI
GTAYGEYEHVSDLSHNSGLGIGRTSGRVADQGRDKPWFGSGSGVSETISSQKNGFNLKPA
FPNYSTAKSANADVHLQTTQGIGSKSSSGMSNSWKNSEEEEFMWDMHSRLSEQEAANISS
NSRNDYWAPDDLERTELESQIEKPPNVPDGSRFDRETSIDSMTSEHKGQPAYVHRTSSPW
PESLPTDILVHSRGSVINPGHSEGCSSSLGGLPGSAKSSLPRKGIRPLISSHQSGTSGFG
ISQNTTSGSAASVGQQQFPSLGAASPSRQSPMHQHPSSPFSPHHPQQLQNLSEQGYQKVH
SVSRPDSKTLQISAQSVNSASLESLPAVPSSTQLSNLQKKLQQPDLPALSASVPSFQLPR
RYLVSQPLHLDSTQSELSSQNRNLGPSQTSKFGTSAKTGNTSSHPNPLDAETSGQSTKSS
LLAAVMKSGILSNNSHTVNIPNQSFKEAVRRTGQAVQPPLPSGPPPTVFTSSRPRVASST
LPASGSCDDISASSNSSQRKLDQPLIPSGPPPSSLAGSALPQTSEVESKAPDPISNLLSS
LVAKGLISASKSDSPSLMETQVPTQSQNQSPANSTSSPMQVTTPVSVQSDVPLAASSLDE
VSVIEPSAKGSANLPQSTTKEAENLIGVQFKPDIVREFHQKVIDGLFDDLPYQCSECGLR
LKLKERLDRHLEWHAKKKLGPNVTDRPSRTWYPNSDDWVAGNLGHLGSDYVGSLDKSEGT
LEREPMVPADENQYACMLCGELFEDYFSQERNQWMFQGAVYMTIPEGDMAVGATDESTVI
VHAKCRNEDSDFGLELNDGIKVEKDG
NT seq
3321 nt
NT seq
+upstream
nt +downstream
nt
atgttgacgggcatggagaattcgcgtagaccgtttgatagatcgagagaccccggacta
ctaaagaaaccacgattggccgaggaacctgttcgcgctgcgaatcctagcggcaggccg
tttgcgcagaggccggtcgctgcggtgaccgcgccggcttcgaggtttagagtcagcaat
gatagagaggccgagaacaatgattcgagtcgcggaggttatcagccgcagccagtagtg
cagcagcaccaggagctcgtcagtcagtacaagacagcgctatctgagctcactttcaat
tcgaagccgataataactaacttgacgataattgctggagaaaatcttcacgcagcgaag
gctgttgcagctaccgtctgcgccaacatccttgaggttcccagtgagcaaaagttgccc
tcgctctatctattagacagtatagtaaaaaatattggaagagattacataaaatacttt
gctgccagactgtatgaggtgttctgtaaggcatacaggcaagtggactcctcagtgcat
ccaagcatgcggcatctttttggaacttggaaaggagtttttcctcctcagacacttcag
atgattgagaaagaacttggtttttctcctttggtcaatggttcatcctccggagcccca
acatctagatctgattcacagtcacaacgaattcatttctttttttttgtgattaaggca
aaaggaatgactaatgaccttactggggctatggccagctcaactgaggatactgagagg
ccagacagaacatcaagtgttaatgtgggacgtccgtggatggatcttcctgccaaagtg
aataacattcagcgttctcgtagagatgcaccaaatgatcctatgcatgacaagaatatt
ggtactgcttatggagaatatgaacatgtttctgatctttcgcataattctggcttgggt
attgggagaaccagtggaagggttgcggaccaaggacgtgacaagccttggtttggatct
ggaagtggtgtctcagagacaatttcaagccagaaaaatggtttcaatctaaagcctgca
tttccaaattactcaactgccaaatctgcaaatgccgatgtgcatctacagacaacgcaa
ggcattggaagcaaaagtagcagtgggatgtctaatagctggaaaaactctgaggaagag
gagtttatgtgggacatgcactcaagattatcagaacaggaggcagccaatatctctagt
aattcgaggaatgattattgggctcctgatgatttagagagaacggagcttgaaagtcaa
attgagaaacctccaaatgtaccagatggttcaaggtttgatagggaaacttctattgat
tcaatgaccagtgaacataaaggccagcctgcatatgtccacaggacatcatccccctgg
ccagagtcactccccacagatatcttggttcattctaggggctctgtaattaatccaggt
cattcagaaggctgttcttccagtcttggtggcttgccgggaagtgcaaaatcttctctt
cctaggaagggaattcgcccactaataagttcacatcagagcggaacttctggttttgga
atttctcagaacacaacttctggatcagctgcgtcagtggggcaacaacagtttccgtcg
ctgggagctgcatcgccatctaggcaatcgcctatgcaccaacatccatcgtcacctttt
tcgccacaccatccccaacaattacaaaatctatctgagcaaggctaccaaaaagttcat
tctgtgtctcggccagattcaaaaacattgcaaatatcggcacagtcagttaattctgct
tctttggaatccttgcctgcagtgccttcgagtactcaactaagtaacttgcaaaaaaaa
ttgcagcaaccagacttaccagctttgtctgcctcagttccttcttttcagctccctcgc
cgttatctcgtttcacagccattacatctagactctacacagtctgaactctccagtcag
aatcgaaacctaggtccgtctcaaacctcaaaatttggaacttctgcaaaaacaggaaat
acatcgagccatcctaatcctcttgatgctgaaacctcaggacaatcaactaagagtagc
ttgttggctgctgtcatgaagagcggaatcctctcgaacaattcacatactgttaacata
cctaatcagagttttaaagaggcagtaaggcgaacaggacaggctgttcagcctcctctt
ccgagtggacctcccccgactgtctttacatcttcaaggcctagggttgcatcatcgact
ttgccagcctctggttcctgtgatgacatttcagcctcttcaaatagttctcagagaaag
ttagatcaaccactgattccatctggcccaccaccttcgtctcttgctggtagtgcattg
ccccagacttcagaagtggagagcaaggccccagatccaatttcaaaccttttgagctct
ctagttgcaaaaggtctgatatctgcatcgaaatcagattcaccatccctgatggaaact
caggttcctactcaatcacagaaccagagtccagctaattctaccagtagccccatgcag
gttactacaccagtttctgttcaatcagatgttccacttgctgcatcttccttggacgag
gtatcagttatagaaccttcagctaaaggttctgctaacctacctcaatcgaccacaaaa
gaggcagaaaacctcattggagtgcaatttaagccagatatagtccgtgaatttcatcaa
aaggtaattgatggcctctttgatgaccttccatatcaatgcagcgaatgtggtcttcgc
cttaaacttaaggaacgccttgatagacatttagagtggcacgctaagaaaaagcttgga
ccaaatgttacagataggccatcgaggacatggtatccaaattcagacgactgggttgct
ggaaacttgggacatttgggatccgactatgttggctcattggataagtctgaagggaca
ttggaaagggagccaatggttccagctgatgaaaatcaatatgcatgcatgttgtgtggc
gagctttttgaagattatttcagccaagaaagaaatcaatggatgttccaaggggcagtt
tacatgaccattccagagggagatatggctgtaggagctacagatgagagcactgttatt
gtgcatgcaaaatgtagaaatgaagattcagattttggcttggagcttaacgatggaatt
aaagtggaaaaggacggatag
DBGET
integrated database retrieval system
