Carica papaya (papaya): 110823304
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Entry
110823304 CDS
T05151
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH3-like
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
cpap
Carica papaya (papaya)
Pathway
cpap03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cpap00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
110823304
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpap03019
]
110823304
03012 Translation factors [BR:
cpap03012
]
110823304
Enzymes [BR:
cpap01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
110823304
Messenger RNA biogenesis [BR:
cpap03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
110823304
Translation factors [BR:
cpap03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
110823304
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
dsrm
DEAD
HA2_N
AAA_22
AAA_19
Dicer_dimer
Motif
Other DBs
NCBI-GeneID:
110823304
NCBI-ProteinID:
XP_021909359
LinkDB
All DBs
Position
Unknown
AA seq
888 aa
AA seq
DB search
MFQVVVVSGETGCGKTTQLPQYILESEVDAARGASCSIICTQPRRISAMAVSERVAAERG
ESLGESVGFKVRLEGMKGRDTRLLFCTTGILLRRLLVDRNLKGVTHVIVDEIHERGMNED
FLLVVLKDLLPRRPELRLILMSATLDAELFSSYFGGAPTMHIPGFTYPVRAHFLENILEI
TGYRLTQYNQIDDYGQEKMWKMQRQVQALRKRKSQIASAVEDALENADFKGYSLRTRESL
SCWNPDSIGFNLIEHVLCHIVKQERSGAVLVFMTGWDDINSLKDQLQAHPLLGDPSRVLL
LACHGSMASSEQRLIFDKPPDGVRKIVLATNMAETSITINDVVFVLDCGKAKETSYDALN
NTPCLLPTWISKAAARQRRGRAGRVQPGECYHLYPRCVYDAFADYQLPELLRTPLQSLCL
QIKSLKLGSISEFLARALQPPEPLSVQNAVEYLKIIGALDENEDLTVLGYNLSMLPVEPK
LGKMLILGAIFSCLDPIMTVVAGLSIRDPFLMPFDKKDLAESAKAQFSADEYSDHLALIR
AYEGWKDAEKEQSGYEYCWKNFLSAQTLKAMDSLRKQFFFLLKDAGLVDENTENCIKWSR
DEHLIRAVICAGLFPGICSVVNREKSIALKTMEDGQVLLHSNSVNAAVPKIPYPWLVFNE
KVKVNSVFLRDSTGVSDSVLLLFGGNISQGGLDGHLKMLGGYLEFFMKPSLSDMYLSLKR
ELDDLIQKKLLDPKLDMMSYYRLISAVRLLVSEDKCEGRFVFGRQVAVPQKKATKVVAKN
EYTGAQNGGDNSKSQLQTLLARAGHGAPIYKTKQLKNNQFRSTVVFNGLNFSGQPCSSKK
VAEKNAAAEAILWLKGENHVSSTDIDHMSMLLKKSKSKTQKGRTVHAK
NT seq
2667 nt
NT seq
+upstream
nt +downstream
nt
atgtttcaggttgttgttgtctctggagaaactggttgtggtaaaaccacacaacttcca
cagtacatactagaatctgaagttgatgctgctcgtggagcttcttgtagtatcatatgc
actcagcctagaagaatatctgcaatggcggtgtctgaaagagttgctgcagaaagaggg
gagagtcttggagaatctgttggctttaaagttcggttggagggaatgaaagggagggat
actcgacttctcttttgtaccactggtattttattgcgaagactacttgttgatagaaat
ttgaaaggtgtaactcatgtaatagttgatgaaatccatgaacgtggaatgaatgaagat
tttcttctggttgtcctaaaagaccttcttcctcgtcgaccagaattaaggttgatttta
atgagtgccaccttggatgctgagcttttctcttcttactttggtggtgccccgacaatg
catattccgggatttacataccctgtccgagcacattttctggagaacattctggagata
actggatataggttgactcaatataatcaaatagatgattatggtcaagaaaaaatgtgg
aaaatgcagagacaagttcaagctctcagaaaaaggaaaagccagattgcttctgctgtt
gaggatgctcttgaaaatgctgactttaaggggtatagtctgcggactcgggagtctttg
tcttgctggaatcctgactcaattggttttaacctcatcgagcacgttctttgtcacata
gtaaagcaagagaggtctggtgctgttctggttttcatgacaggttgggatgacataaac
tctttgaaggatcaacttcaagctcatcctctcctgggggatcctagcagggttttatta
ttggcatgccatggttccatggctagctctgagcagagattaatctttgataagcctcca
gatggagttaggaaaattgttctggctactaatatggctgaaaccagtatcaccatcaat
gatgtggtttttgtgctagactgtggaaaggcaaaagagacatcttatgatgcactaaat
aacactccttgtttgcttcctacctggatctcaaaagcagctgctcgtcaaagaagagga
agagctggtcgtgttcagcccggagaatgttatcatctatatcccagatgtgtatacgat
gcctttgctgattatcagttgccggaactcttaagaacaccattacagtctttatgtttg
caaatcaaaagtctaaaactaggaagcatttctgagttccttgccagggccttgcagcca
cctgagcctctatcggtacaaaatgctgttgaatatctgaagatcattggggctttagat
gagaacgaagacttgacggtgctaggatacaacttatctatgcttccagttgagccgaag
cttgggaaaatgctcatattaggggccatcttcagttgtctggatccaataatgactgtt
gttgctggtcttagtatcagagatccattcctgatgccctttgataagaaagatcttgca
gagtcagcaaaagcgcagttctccgcagatgagtatagtgaccatctggcactgatccgg
gcatatgagggttggaaagatgctgaaaaagagcaatctggttatgaatattgctggaag
aattttctttctgcacaaactctaaaagctatggattctctcagaaaacaattcttcttt
ttactcaaggatgctggtcttgttgatgagaatacagaaaactgcattaagtggagtcga
gatgaacatctaatccgagcagtcatctgtgcaggcttgtttcctggaatttgttctgtt
gtgaacagggagaagtcaatagcattgaaaactatggaggatggtcaagtgcttctgcac
tcgaattccgtgaatgctgcagtacccaaaattccttacccatggttagtcttcaatgaa
aaagtgaaagttaattcagtttttctccgggattctactggtgtatctgactctgtgctt
ctcttatttggaggaaacatttcccagggcggtctagatgggcacctaaaaatgttgggc
ggatacttggagttctttatgaaaccttccttgtcagatatgtacttgagtttaaagagg
gagcttgatgacttaattcagaagaagcttctagatcccaaacttgatatgatgtcctac
tacagactcatatcagccgtaagattgctggtatcagaggataaatgtgagggtagattc
gtttttggtcgccaggtagcagtaccccagaaaaaggcaaccaaagtggtagccaagaat
gaatatactggggctcaaaatgggggtgataactccaagagccagctacaaacattgctt
gccagggcaggacatggggcaccgatatataagacaaaacaacttaaaaacaaccagttc
cgctctactgttgtctttaatggcttgaacttttcagggcagccatgtagcagtaagaaa
gtcgcggaaaagaacgcggctgctgaggctattctatggttgaaaggtgagaatcatgta
tcatcaacagatattgatcatatgtcaatgctcttaaagaagagcaaaagcaaaactcag
aaaggaaggacagttcatgctaaatga
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