KEGG   Carica papaya (papaya): 110823444
Entry
110823444         CDS       T05151                                 
Name
(RefSeq) protein TRANSPARENT TESTA GLABRA 1
  KO
K11805  DDB1- and CUL4-associated factor 7
Organism
cpap  Carica papaya (papaya)
Pathway
cpap03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:cpap00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03083 Polycomb repressive complex
    110823444
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:cpap04121]
    110823444
   03036 Chromosome and associated proteins [BR:cpap03036]
    110823444
Ubiquitin system [BR:cpap04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   Cul4 complex
    Target recognizing subunit (DCAF)
     110823444
Chromosome and associated proteins [BR:cpap03036]
 Eukaryotic type
  Histone modification proteins
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.3/1.5)
     110823444
SSDB
Motif
Pfam: Beta-prop_THOC3 WD40_CDC20-Fz Beta-prop_WDR5 Beta-prop_WDR3_1st WD40_Prp19 Beta-prop_CAF1B_HIR1 WD40_WDHD1_1st WD40 WD40_Gbeta Beta-prop_EIPR1 Beta-prop_RIG_2nd Beta-prop_TEP1_2nd Beta-prop_WDR36-Utp21_2nd WD40_MABP1-WDR62_2nd WDR55 Beta-prop_Aladin Beta-prop_WDR3_2nd Beta-prop_EML_2 Beta-prop_WDR41 EIF3I Beta-prop_WDR36-Utp21_1st Beta-prop_WDR90_POC16_2nd MIOS_WD40 Beta-prop_WDR35_TULP_N WD40_RFWD3 Beta-prop_WDR19_1st Beta-prop_Vps41
Other DBs
NCBI-GeneID: 110823444
NCBI-ProteinID: XP_021909514
LinkDB
Position
Unknown
AA seq 343 aa
MENSTQESHLGSDNCITYESPYPLYAMSFSSIHHHHHHPQRIAVGSFIEDFTNRVDILIF
DPETFSIRTQPTLSFEHPYPPTKLMFHPNAPSSLLKSSSDLLASSGDFLRLWEIRDSSVE
PVSVLNNSKTSEFCAPLTSFDWNEVEPRRIGTSSIDTTCTIWDIEKGAVETQLIAHDKEV
YDIAWGEARVFASVSADGSVRIFDLRDKEHSTIIYESPQPDTPLLRLAWNKQDLRYMATI
LMDSNKVVILDIRSPTMPVAELERHHASVNAIAWAPQSCRHICSAGDDTQALIWELPTVA
GPNGIDPMSMYSSGSEINQLQWSAAQPDWIAIAFANKMQLLKV
NT seq 1032 nt   +upstreamnt  +downstreamnt
atggagaactcaactcaagagtcccacctgggatcagataactgcatcacatacgaatcc
ccataccctctctacgccatgtccttttcttctatccaccatcaccaccaccacccgcaa
cgcattgccgtcgggagtttcattgaggattttacaaatcgggtcgacatcctcattttc
gacccggaaacattctcaattagaacacaacccactctctccttcgagcatccgtacccg
cctaccaagctgatgttccacccaaatgctccctcctcgcttcttaaatcctcatccgat
ctgcttgcgtcctctggcgactttcttcggctatgggagatccgcgattcgtcggtggaa
cccgtgtctgtcctcaacaacagcaaaacaagcgagttctgcgctccgttgacctccttc
gattggaacgaggtggagccccggagaatcgggacttcgagcatcgacaccacctgcacc
atctgggatatcgagaagggcgcggtggaaacgcagctcatagctcatgataaggaggtg
tacgacatcgcttggggcgaagccagggtcttcgcctccgtatccgccgatgggtctgtc
agaattttcgatttgagagacaaagagcattccaccattatctacgagagcccgcaacct
gatacccctttgcttagattggcttggaacaagcaggatttgaggtacatggcgaccatt
ttgatggacagcaacaaagttgtgattctggatattcgctccccaaccatgccggtagct
gagttggagaggcatcacgcgagtgttaacgctattgcttgggctccgcagagctgcaga
cacatttgctccgctggcgatgacacgcaggcgcttatttgggagctgccgacggtggct
ggacccaatgggatcgacccaatgtccatgtactcttctgggtccgagattaaccagctg
cagtggtctgcagctcagcctgattggatcgccattgcttttgctaacaagatgcagttg
ttgaaagtttaa

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