Carica papaya (papaya): 110823708
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Entry
110823708 CDS
T05151
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 20-like
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
cpap
Carica papaya (papaya)
Pathway
cpap03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cpap00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
110823708
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cpap03041
]
110823708
03009 Ribosome biogenesis [BR:
cpap03009
]
110823708
Enzymes [BR:
cpap01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
110823708
Spliceosome [BR:
cpap03041
]
Complex A
U1 snRNP components
U1 related factors
110823708
Complex B
110823708
Ribosome biogenesis [BR:
cpap03009
]
Eukaryotic type
Pre-60S particles
Helicases
110823708
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
SWI2_SNF2
AAA_30
Cas3-like_C_2
PRAI
Motif
Other DBs
NCBI-GeneID:
110823708
NCBI-ProteinID:
XP_021909839
LinkDB
All DBs
Position
Unknown
AA seq
582 aa
AA seq
DB search
MSYVPPHLRNSSSTSFTKSSSLNLDSFDQSKLSCSSNFHFNNSSFTNTTVAAAASSSSSS
SSASSSPPSTFSNGYRRVSSMPTSVRALHVPDPVFHPWKPSDRVLRLTPEQTEEVRSRLN
VDVTVASGSPSAPAPIESFADMCLHPSIMKDIIFHEYTTPTSIQAQAMPVALSGRDLLGC
AETGSGKTAAFAIPMIQHCLAQSPVQRGNGPLALVLAPTRELAQQIEKEVKAFSRSLESF
RTAIVVGGTNIGEQRSELRAGVDIVVATPGRFIDHLQQGNTSLSRVSFVILDEADRMLDM
GFEPQIREVMRNLPARHQTLLFSATMPVEIEMLAQDYLTTPVQVKVGKVCSPTANVLQVL
EKVSESEKVDRLLDLLVEEGSQAERSGHPFPLTIVFVERKTRCDDVAEALVAQGLHAVSL
HGGRSQNERESALRDFRNGSTNILVATDVASRGLDVSGVSHVVNLDLPKTMEDYVHRIGR
TGRAGSMGRATSFYVDRDMFLVTQIKKAIADVESGNTVAFATGKVARRKEREAAAAQKEA
RNALSKLALMGPTSINIEDKYRFMIAPSNVKSAGAADSAWDD
NT seq
1749 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtatgtgcctccacacctgaggaactcaagctcaacctccttcaccaaatcctcc
tctctaaacctagactcgtttgatcaatccaagctctcctgttcttccaatttccatttc
aacaactcctcttttaccaatactaccgttgctgctgctgcttcttcgtcttcgtcttct
tcttctgcttcctcttctcctccctccacattctcaaatggatatcgtcgggtgtccagc
atgccaacgtcggtgagggctctgcatgttcccgaccctgttttccatccgtggaaaccc
tccgaccgagttctccgcttgacgcctgagcagaccgaagaggttcgttctcggctcaat
gttgatgttactgtagcttcaggctctccttctgctcctgcaccgattgagtcttttgcg
gacatgtgtttgcatccaagtataatgaaggacataatatttcatgaatacaccacacca
acttcaattcaggcgcaggccatgccagtagctcttagtggaagggacctgttgggttgt
gctgaaactggtagtggcaagactgctgcctttgccattccaatgatacagcattgcttg
gctcaatctcctgttcagcgtggtaatggacctttggcacttgtgttggctcctactaga
gagcttgcacaacaaatagaaaaagaggttaaagcttttagcagatctctggaatctttc
agaactgcaattgtggttggtggaacaaacatcggtgaacaaagatctgagcttcgggct
ggagtggatatagtggtggctactcctggaagatttatcgaccatttgcagcaaggcaac
acttccctttcgagagtttcatttgttattctggatgaagctgatagaatgcttgatatg
gggttcgaaccacagataagagaggtaatgcggaaccttccagcaaggcatcaaactttg
ctgtttagtgcaaccatgcctgtggaaattgaaatgctagcgcaggattacttgaccact
cctgtacaagtaaaggtcggcaaagtgtgcagccctacagcgaatgtacttcaagttttg
gagaaagtttctgaaagtgagaaggttgatcgacttctagatctacttgttgaggaggga
tctcaggctgagagatctggtcatccattccctttaaccattgtgtttgtagaacggaag
acacggtgcgatgatgtcgctgaagctttggtagcacaaggtttacatgcagtctctctt
catggtggccgtagtcagaacgaaagagaatctgcccttcgtgattttaggaatggctca
actaatattttggttgcaacggatgttgcatctcgtggtttggatgtctcaggagtttct
catgttgttaatctagatcttccaaagaccatggaagattatgtacaccggattgggagg
acagggcgtgccggttctatgggccgagctacttcattttatgtagatcgtgacatgttc
ctggtgactcaaataaagaaagcaatagcagatgttgaatctgggaatactgtggctttt
gctactgggaaggttgcaagaaggaaggagagagaggcagctgctgcacaaaaagaagca
aggaatgccttgtcaaagttggcattgatgggacccacttcaataaacattgaagacaag
tataggttcatgattgcaccctcaaatgtcaaaagtgcaggtgcagcagatagtgcttgg
gatgattga
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