Carica papaya (papaya): 110823917
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Entry
110823917 CDS
T05151
Name
(RefSeq) spliceosome-associated protein 130 A
KO
K12830
splicing factor 3B subunit 3
Organism
cpap
Carica papaya (papaya)
Pathway
cpap03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cpap00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
110823917
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cpap03021
]
110823917
03041 Spliceosome [BR:
cpap03041
]
110823917
03036 Chromosome and associated proteins [BR:
cpap03036
]
110823917
Transcription machinery [BR:
cpap03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
110823917
Spliceosome [BR:
cpap03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
110823917
Complex B
110823917
Complex C
U2 SnRNP specific factors
110823917
Chromosome and associated proteins [BR:
cpap03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
110823917
TFTC complex
110823917
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_RSE1_1st
Beta-prop_RSE1_2nd
CPSF_A
Beta-prop_BBS7
WDR55
Motif
Other DBs
NCBI-GeneID:
110823917
NCBI-ProteinID:
XP_021910107
LinkDB
All DBs
Position
Unknown
AA seq
1213 aa
AA seq
DB search
MYLYNLTLQQATGILCAINGNFSGGKTQEIVVARGKVLDLLRPDENGKIQTLLSVEVFGA
IRSLAQFRLTGSQKDYIVVGSDSGRIVILEYNKEKNVFDKVHQETFGKSGCRRIVPGQYL
AIDPKGRAVMIGACEKQKLVYVLNRDTAARLTISSPLEAHKSHTICYSICGVDCGFENPI
FAAIELDYSEADQDSTGQAASEAQKQLTFYELDLGLNHVSRKWSEQVDNGANLLVTVPGG
GDGPSGVLVCAENFVIYKNSKGPDFRAVIPRRADLPAERGVLIVSAAMHKQKSMFFFLLQ
TEYGDIFKVTLEHDGDSVSELKIKYFDTIPVTASMCVLKSGFLFAASEFGNHALYQFQAI
GEEPDVESSSATLMETDEGFQPVFFQPRGLKNLVRIDQVESLMPIMDMKVINLFEEETPQ
IFSLCGRGPRSSLRILRPGLAISEMAVSQLPGLPSAVWTVKKNVNDEFDAYIVVSFTNAT
LVLSIGETVEEVSDSGFLDTTPSLAVSLIGDDSLMQVHPNGIRHIREDGRINEWRTPGKR
SIVKVGSNRLQVVIALTGGELIYFEVDMTGQLMEVEKHEMSGDVACLDIAPVPEGRQRSR
FLAVGSYDNTIRILSLDPDDCMQILSVQSVSSPPESLLFLEVQASVGGEDGADHPASLFL
NAGLQTGVLFRTVVDMVTGQLSDSRSRFLGLRPPKLFSVIVRGRRAMLCLSSRPWLGYIH
QGHFQLTPLSYETLEFAASFSSDQCAEGVVAVAGDALRIFTIERLGETFNETVIPLRYTP
RKFVLHPKWKLLVIIESDQGAFNAEEREAARKEFFEAAGMGENGNANAEQMENGDDEDKD
DPLSDEQYGYPKAESDKWVSCIRVLDPRKATTTCLLELQDNEAAFSVCTVNFHDKEYGTL
LAVGTAKGLQFWPKRSLVAGFIHIYRFLEDGKSLELLHKTQVEGVPLALSQFQGRLLAGI
GPVLRLYDLGKRRLLRKCENKLFPNKIVSIHTYRDRIYVGDIQESFHFCKYRRDENQLYI
FADDCVPRWLTASYHIDFDTMAGADKFGNFYFVRLPQDVSDEIEEDPTGGKIKWEQGKLN
GAPNKVEEIVQFHVGDVVTCLQKASLIPGGSECIIYGTVMGSLGALHAFTSRDDVDFFSH
LEMHMRQEHPPLCGRDHMAYRSAYFPVKDVIDGDLCEQFPTLPLDLQRKIADELDRTPGE
ILKKLEEVRNKII
NT seq
3642 nt
NT seq
+upstream
nt +downstream
nt
atgtatctatacaatctcaccctgcagcaggctaccggcattctctgtgccataaatggg
aacttctccggcggcaagacgcaggagattgtcgttgctcgtggtaaggtcctagatctc
ctccgacctgacgagaacggtaagatccaaactttactctctgtcgaagtgtttggtgcc
attagatccctagctcagtttcgcttaaccgggtcccaaaaagattacatcgttgtcggt
tccgattccggtcgaatcgtaatactagagtacaacaaggagaaaaacgtattcgacaag
gtacaccaagaaacttttgggaagtctggctgtcgccggattgttccgggtcagtacctg
gctattgacccgaaagggagagctgttatgataggtgcctgtgagaaacagaaacttgtg
tatgttttgaatagggatactgctgcaagattaacgatttcgtctccgctagaggcgcac
aaatcgcacacgatatgttattccatttgcggggtggattgcggttttgagaacccgatt
tttgctgccattgagcttgattactcggaggcagatcaggattccaccggacaagcagct
agtgaagcccagaagcaattgactttttacgagctagatttagggcttaaccatgtgtct
aggaaatggtctgaacaggttgataatggtgccaacttgcttgttactgttccgggagga
ggggatgggccaagtggagtactggtgtgtgctgagaattttgtaatttataaaaattct
aaaggtccagatttccgagcagtgattcctaggcgggcagatttgcctgctgaacggggg
gttctaatagtgtcagctgcaatgcataagcagaagtccatgttcttctttcttttgcaa
actgaatatggagacatttttaaggttactttggaacatgacggggatagcgtttcggag
ttgaagattaaatattttgatactattccggttacagcttccatgtgtgtgttgaagtct
ggatttttgtttgctgcatcggagtttggaaatcatgctttgtatcagtttcaggcaata
ggggaggagcctgacgtggagtcatcttcagccactttgatggaaactgatgaaggtttc
cagcctgtgtttttccagcctagaggactcaaaaaccttgttaggattgaccaggttgag
agcctgatgccaataatggacatgaaagtaataaatctctttgaggaagaaacacctcag
atattttcactttgtggacgaggtcctcgttcctctttaaggatattaaggcctgggttg
gccatcagtgagatggctgtgtcacagcttcctggtctcccaagtgcagtttggactgtg
aaaaagaatgtcaatgatgagtttgatgcatatattgtggtctcttttaccaatgccacc
cttgtgctttcaattggtgaaacggttgaagaagtcagcgatagtgggtttcttgatact
actccctcccttgctgtttctttaataggtgatgattctctaatgcaagtccaccctaat
ggtattcggcatattagggaagatgggcgtattaatgagtggagaacccctggaaagagg
tcgattgttaaggttggttcaaacagactccaagtagttattgcccttacaggaggggaa
cttatatattttgaggtggatatgactggtcagctgatggaggtggagaaacatgaaatg
tctggagatgtggcttgcttggacattgctccagtccctgaaggaagacagaggtcacgc
ttccttgcagttggttcttatgacaacaccattcgtatcttatctttggatcctgatgac
tgtatgcagattctcagtgttcaaagtgtatcttcgcctccagaatccctcctctttctt
gaagtccaggcttcagtaggtggagaagatggtgctgatcaccctgctagtcttttcctt
aatgctggtttacagactggggttctatttaggacagttgtggatatggtgactggtcaa
ctttctgattcccgttcccggtttttagggctgaggcctccgaagttattctcggtcatt
gtgagaggacgacgtgcaatgctttgcttgtccagtcgaccctggcttggttatattcac
cagggacatttccagttaacacctctttcttatgagactcttgaatttgctgcttcattt
tcatccgatcaatgtgctgaaggtgttgttgctgtggctggggatgcattgaggattttc
acaattgagcgtcttggggaaacatttaacgaaactgtgattcctttaaggtacacgcca
agaaagtttgttctccaccccaagtggaagttgttagtgattattgagagtgaccaagga
gcattcaatgcagaagaacgtgaagctgcaagaaaggaattctttgaagctgctggaatg
ggagaaaatggcaatgctaatgctgaacaaatggagaatggtgatgatgaagacaaagat
gatcccctctcggatgagcagtatggttatccaaaggcagaatcagacaagtgggtttct
tgtatccgagtccttgatccaaggaaagctactacaacttgtctcctagaacttcaggac
aatgaagctgcattcagtgtttgtactgttaatttccatgataaggagtatggaactctt
ttagcagttggtacagccaagggactgcagttttggcccaaaagaagtttagtagcgggg
tttattcatatttataggtttctggaagatgggaaatctcttgaacttctgcacaagaca
caagtggaaggtgtacctcttgctttatcccaatttcagggaagattgctagctggaata
ggtcctgtacttaggttatacgacttggggaaaaggaggttgctcagaaaatgtgaaaat
aagctgttccctaacaaaattgtctcgattcatacttatcgtgaccgaatttatgttggt
gatattcaggagtcattccatttctgcaagtatagacgagacgaaaatcaactgtacata
tttgcagatgattgtgtcccaagatggcttactgcatcatatcacatagattttgatacg
atggcgggtgcggacaaatttgggaatttctattttgttcggttgccacaggatgtgtca
gatgagattgaggaagatccaactggtgggaagattaagtgggagcaagggaagctcaat
ggagcacctaacaaggtagaagagatagtgcagtttcatgttggtgatgtggttacttgt
ttgcagaaggcatctttgatcccaggtgggtcagaatgcatcatttatggaactgtcatg
gggagcttgggggcattgcatgcattcacctcacgtgatgatgttgacttcttttcgcat
ttggagatgcatatgaggcaggaacacccacctttatgtggaagagatcacatggcttat
agatctgcgtactttcctgtcaaggatgtgatagatggcgatctatgtgagcagttccca
acacttcctctggacttgcaaagaaaaattgctgacgagttggatagaacacccggagag
atattgaagaaacttgaagaagttcgaaataagataatttga
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integrated database retrieval system
