Carica papaya (papaya): 110824008
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Entry
110824008 CDS
T05151
Name
(RefSeq) sm-like protein LSM7
KO
K12626
U6 snRNA-associated Sm-like protein LSm7
Organism
cpap
Carica papaya (papaya)
Pathway
cpap03018
RNA degradation
cpap03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cpap00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
110824008
09123 Folding, sorting and degradation
03018 RNA degradation
110824008
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpap03019
]
110824008
03041 Spliceosome [BR:
cpap03041
]
110824008
Messenger RNA biogenesis [BR:
cpap03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
110824008
mRNA degradation factors
5'-3' decay
Lsm complex
110824008
Spliceosome [BR:
cpap03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
110824008
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
Hfq
DUF150_C
Motif
Other DBs
NCBI-GeneID:
110824008
NCBI-ProteinID:
XP_021910242
LinkDB
All DBs
Position
Unknown
AA seq
80 aa
AA seq
DB search
MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRVNVLMQLG
RGSFSFDPFLDMDHQCQRDV
NT seq
243 nt
NT seq
+upstream
nt +downstream
nt
atgtctggaaggaaagagacggtgctggatttggcaaagtttgtggataaaggagttcaa
gtcaagcttactggtggcagacaagtgacaggaactctaaagggctatgatcaattgtta
aatcttgtcctggatgaagcggtggagtttcttagagtgaacgtactgatgcagcttggt
cgtggtagtttctcttttgatccttttttggatatggatcatcaatgccaacgagacgta
taa
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