Carica papaya (papaya): 110824017
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Entry
110824017 CDS
T05151
Name
(RefSeq) regulator of nonsense transcripts UPF2
KO
K14327
regulator of nonsense transcripts 2
Organism
cpap
Carica papaya (papaya)
Pathway
cpap03013
Nucleocytoplasmic transport
cpap03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cpap00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
110824017
03015 mRNA surveillance pathway
110824017
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpap03019
]
110824017
Messenger RNA biogenesis [BR:
cpap03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
110824017
mRNA cycle factors
P-body specific factors
110824017
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MIF4G
Upf2
Xpo1
Motif
Other DBs
NCBI-GeneID:
110824017
NCBI-ProteinID:
XP_021910214
LinkDB
All DBs
Position
Unknown
AA seq
1156 aa
AA seq
DB search
MDQQEEECHLGSGLSGKQDAEEAVARLEEIKKSIEAKMALRQSNLNPERPDSGFLRTLDS
SIKRNTAVIKKLKQINEEQREVLMDELRNVNLSKFVSEAVTAICDAKLKSSDIQAAVQIC
SLLHQRYKDFSPSLVQGLLKVFFPGKSGDDLDADRNLKAMKKRSTLRLLVELYFVGVIED
SGIFTNIIKDLTSVEHLKDRDTTQTNLTLLASFAKQGRVFLGLPLSGQDEEYSKGLNITT
DQKKIFRKAFHAYSDAVAELLQSEHSLLRQMEHENAKIINAKGELNEENASSYEKLRKSY
DHLYRNISSLAEALDMQPPVMPEDGHTTRVTTGEDASSPAAGKDSSLVEAIWDDEDTRTF
YECLPDLRAFVPAVLLGEAEPKTTEQSGKMQEKPTESASESFQSQLPAQDTIDTSLDSGS
LAEGKSIEKAKDKEEKVKEPEKEKGKERDTDKKGENGKEKLKNLEGANLDALLQRLPGCV
SRDLIDQLTVEFCYLNSKSNRKRLVRALFNVPRTSLELLPYYSRLVATLSTCMKDISTML
LQMLEEEFSSLVNKKDQMNIETKIRNIRFIGELCKFKIAPAGLVFSCLKACLDDFTHHNI
DVACNLLETCGRFLYRSPETTIRMANMLEILMRLKNVKNLDPRHSTLVENAYYLCKPPER
SARVSKVRPPLHQYIRKLLFSDLDKSSIEHVLRQLRKLPWSECEQYLLKCFLKVHKGKYG
QIHLIASLTAGLSRYHDEFAVAVVDEVLEEIRLGLELNDYGMQQKRIAHMRFLGELYNYE
HVDSSVIFETLYLILIFGHGTPEQEVLDPQEDCFRIRMVITLLETCGHYFDRGSSKRKLD
RFLIHFQRYILSKGSLPLDVEFDLQDLFADLRPNVTRYTSLEEVNAAIIELEEHERTISA
DKSNSEKHSDTEKSSIRTASNVISGNGPSIINGADENGGMHDDNGDSDSDSGSGTIEPDG
REEEELDEENRDDGCDSEDDDDDGDGVGPVSDEDDEVHVRQKITEADPLEVANFDLELRA
VVQESMEQRKQELRGRPALNMTIPMNVFEGSTRDHHGRAAGGESGDEVLDAETGGRKEVQ
VKVLVKRGNKQQTKQMYIPKDCSLIQSTKQKEAAEIEEKQDIKRLVWILVEQNSKSECIL
VFFLCIVDEDTAFSIW
NT seq
3471 nt
NT seq
+upstream
nt +downstream
nt
atggatcagcaggaggaggaatgccatcttggaagtggacttagtggcaagcaagatgct
gaggaagctgttgctcgtctggaggaaattaagaagtcaattgaggcaaagatggctctt
cgtcaaagcaatttgaatcctgaaaggcctgactcaggcttccttaggacattggattct
agcatcaagcggaacacagcagtaattaagaaattaaagcagataaatgaagaacagcga
gaagtgctgatggatgagctgcgaaatgtcaaccttagcaaatttgttagtgaggctgtg
acggctatttgtgatgcgaagcttaaaagttcagacattcaagcagcagttcagatctgc
tctttacttcaccaaaggtacaaagacttctcgccaagtctggtgcaaggactcttaaaa
gttttctttcctggaaaatctggagatgatttggatgcagacaggaatttgaaggccatg
aaaaagcgaagtactctgagactccttgtggagctttactttgttggagtgatagaagat
agtggcatcttcaccaatattattaaggaccttactagtgttgaacacttgaaggaccga
gatactactcagacaaatttgactctcctggctagttttgctaaacaaggaagagttttc
ctagggcttcccctctctggccaagatgaagagtattctaagggcctaaacatcacaaca
gatcagaagaaaattttcaggaaggcttttcatgcatattctgatgctgttgcggaactt
cttcagtctgaacattctttactgcggcaaatggagcatgagaatgcaaagattataaat
gctaaaggggagcttaatgaggaaaatgcctcttcatatgagaagctccgaaaatcttat
gaccatttgtatcgcaatatctcatcgttggctgaagcacttgatatgcagcctccggtg
atgcctgaggatggtcacacaactagggttactactggagaggatgcttcatctcctgct
gctggaaaagattcttctcttgttgaagcgatttgggatgatgaagataccaggactttc
tatgaatgcttaccagatcttagggcatttgttcctgctgtattattaggggaagcagag
cctaaaacaactgaacaatctggaaagatgcaagagaaacctactgaatctgcttctgaa
tcatttcaaagtcaactgcctgcacaagatactatagatacttctctagattcaggaagt
ttggcagaggggaaaagcattgagaaagcaaaagacaaggaagaaaaagttaaggagcct
gagaaggagaagggcaaggaaagggatacagacaagaaaggagaaaatgggaaggagaaa
cttaaaaatcttgaaggggcaaatttggatgctctattgcagagacttcctggctgcgtt
agtcgtgaccttattgatcaactaactgtggagttttgttatttaaattctaagtcaaat
cggaaaaggcttgtgagggcattgtttaatgtccctaggacatctctggagctattgcca
tactattcacgcttggttgccacactctcaacttgtatgaaggatatctctaccatgctg
ttgcagatgttggaagaggagtttagctccttagtaaataagaaggatcaaatgaatatt
gaaacaaagatccggaatattaggtttattggagaactctgcaagttcaaaatagcccca
gctggtcttgttttcagttgtttaaaggcttgtttagatgattttactcatcacaacatt
gatgttgcttgcaatcttcttgagacatgtggtcgtttcctgtatcgatctcctgaaact
actatacggatggctaacatgttagagatattgatgcgcctgaaaaatgtgaaaaatctg
gatcctcgacacagcactttagtcgaaaatgcttactacctgtgcaagccacccgaaaga
tcagcacgagtctctaaagtccgtcctccactacatcagtacattagaaaattgctgttc
tcggatcttgataagtcttctattgagcatgtgctgaggcaacttcgtaaattgccatgg
agtgaatgcgagcaataccttctaaagtgctttttgaaggtccacaaaggaaagtatggt
caaattcacttgattgcttctctgactgctggtttgagccgctatcatgatgaatttgca
gtagctgttgtagatgaggttttggaagagattagacttgggctggagttgaatgactat
ggaatgcagcaaaaacgcattgctcatatgcgatttttaggagaattatacaactatgag
catgtggattcatctgttatttttgagacactttacttgattcttatcttcggccatggt
actccagagcaagaggtgctcgatccacaagaagattgtttccgtattaggatggtaatc
actcttcttgagacatgtggacactactttgaccgaggttcctccaagagaaaacttgat
cggttcttgatacacttccagagatatatactcagtaaaggttccctaccacttgatgtt
gaatttgacttgcaggacttatttgcggacttacgccccaacgtgactcggtacacatcc
cttgaagaggttaatgctgctattatagaacttgaggaacatgaacgtactatctcagct
gacaagtccaatagtgagaagcactctgacaccgagaagtcttcaatcagaactgcttcc
aatgtcatatcaggaaatggaccaagcatcataaatggggctgatgaaaatgggggaatg
catgatgacaatggagacagtgatagtgattctgggagtggcaccattgaaccagatgga
cgtgaagaagaagagttggatgaagagaaccgtgatgatggatgtgacagtgaagatgac
gatgacgatggtgatggtgttggacctgtttccgatgaggatgatgaagttcatgtcaga
cagaagataacagaggcagaccctctggaagtagccaattttgatctagagctcagggct
gtggtgcaggagagcatggagcaacgcaagcaggaactacgtggccgacctgctttgaat
atgacaatacctatgaatgtatttgagggatctaccagggatcaccacgggagggcagct
ggaggtgaaagtggtgatgaagtactggatgcggaaactggaggaagaaaggaggttcag
gtaaaagttcttgtaaagcgcgggaacaagcaacaaacaaagcaaatgtacattcccaag
gattgctcacttatacagagcacaaaacagaaagaagcagcagagattgaagagaaacag
gacattaaaagattggtttggatcttagttgaacagaactcgaaaagtgagtgtattctg
gttttcttcctttgcatagtagacgaggacactgcgtttagcatttggtga
DBGET
integrated database retrieval system
