Carica papaya (papaya): 110825125
Help
Entry
110825125 CDS
T05151
Name
(RefSeq) DNA mismatch repair protein MSH2
KO
K08735
DNA mismatch repair protein MSH2
Organism
cpap
Carica papaya (papaya)
Pathway
cpap03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cpap00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
110825125
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cpap03400
]
110825125
DNA repair and recombination proteins [BR:
cpap03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
110825125
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MutS_III
MutS_IV
MutS_II
MutS_I
DUF6437
Motif
Other DBs
NCBI-GeneID:
110825125
NCBI-ProteinID:
XP_021911277
LinkDB
All DBs
Position
Unknown
AA seq
620 aa
AA seq
DB search
DPRAVRFFDRRDYYTAHGENATFIAKTYYHTTTALRQLGGRSDGLSSVSVSRNMFETIAR
DLLLERMDHTLELYEGSGSNWRLVKSGTPGNLSGFEDVLFANNEMEDTPVVVALLPNFRD
NGCTVGLGYLDLTKKILGLTEFLDDSHFTNVESALVALGCKECLLPTESGKSNEFRTLND
AFSRCGVMVTERKKSEFKARDLVQDLGRLVKGSIEPVKDLVSGFEIAPAALGALLNYAEL
LSNESNYGNYTIRRYSLNSYMRLDSAAMRALNIMESKTDANKNFSLFGLMNRTCTAGMGK
RLLHMWLKQPLLDCTEINCRLDMVQAFVEDTALRQNLRQHLKRISDIERLIHNLQKKRAG
LQHIVKLYQSSIRLPYIRSAIEQYDGEFSALIKERYLDPLELLTDDDHLNKFIALVETSV
DLDQLDNGEYMISSSYDSALSALKEEQESLEQQIHNLHKQTALELDLPLDKALKLDKGTQ
FGHVFRITKKEEPKIRKKLTTQFIVLETRKDGVKFTNTKLKKLGDRYQKILDDYKNCQKE
LVNQVVQTAGTFSEVFESLAGLLSELDVLLSFAELASSCPTPYTRPNITSSVTTFFFFFY
YILFLVFMLFALFFKYLHPM
NT seq
1860 nt
NT seq
+upstream
nt +downstream
nt
gaccctagggctgttcgcttctttgatcggcgggattattatactgctcacggtgaaaat
gccacttttattgcaaaaacatactatcatacaaccactgctttgaggcaacttggtggc
agatctgatggcctctccagcgtaagtgttagtagaaacatgtttgaaactattgcccgt
gatcttcttctagagagaatggaccatactcttgaactctatgaaggtagtggctccaat
tggagattagtgaaaagtggaactcctggaaatcttagcggttttgaagatgtcttattt
gccaacaatgagatggaggatacacctgtggttgtggccttacttccaaacttccgtgac
aatggctgcacagttggcttggggtatcttgatttaactaagaaaatacttggattaact
gaatttcttgatgatagccactttacaaatgttgaatcagctttggtcgctcttggttgt
aaggaatgtcttttgcctactgagagtggaaaatcaaatgaatttagaactctgaatgat
gctttctccagatgtggtgtgatggtaacagaaagaaaaaaaagtgagtttaaagcgaga
gatttggtgcaggatctgggtcggcttgttaagggctcaattgagccagttaaagattta
gtttctggatttgaaattgcacctgctgctttaggtgcactactaaactatgcagaatta
ctctcaaatgagagcaattatggaaattataccatccgaaggtacagtcttaacagctat
atgagattagattcggctgctatgagggcgcttaatatcatggaaagcaaaactgacgca
aataaaaattttagtttgtttggtctcatgaatagaacctgcactgctggtatggggaaa
cgattacttcatatgtggctaaaacagcctttattagattgtactgaaatcaactgcagg
ctagatatggtgcaagcatttgttgaagatactgctcttcgccaaaatctgaggcagcat
ctcaaaagaatctctgatatagaaagactgatccacaatcttcagaagaaaagagctggt
ttgcagcatattgtaaaactttatcagtcaagtataaggcttccctacattcggagtgct
atagaacagtatgatggagaattttcagcattgatcaaggagagatatttggaccccctt
gagttgttgactgatgatgatcacttgaataagttcattgctcttgtagaaacatctgtt
gatcttgatcaacttgataatggggagtatatgatttcatctagttatgactctgcacta
tctgcactgaaagaggagcaagagtcactcgagcagcaaatacacaatttgcataagcaa
actgctcttgagcttgatctaccgttggataaggcactaaagttggataagggcacacag
tttgggcatgtatttagaattacaaagaaggaagagccaaaaataagaaaaaagctcaca
acccaatttattgtcctcgaaacacggaaagatggtgtaaaatttacaaatacgaaactt
aaaaaattaggtgatcggtaccaaaagattcttgatgattacaagaattgtcaaaaagag
ctggttaaccaggtggtccaaactgcaggaactttttctgaggttttcgaatcattggct
ggattgctctccgaattggatgtcttgcttagttttgctgagttggcatccagttgtcct
actccatacactagacccaacatcacctcatcagtaactactttctttttttttttttac
tacattttgtttcttgtcttcatgcttttcgctttgttttttaaatatcttcatcctatg
DBGET
integrated database retrieval system