Carica papaya (papaya): 110825280
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Entry
110825280 CDS
T05151
Name
(RefSeq) LOW QUALITY PROTEIN: uncharacterized protein LOC110825280
KO
K06100
symplekin
Organism
cpap
Carica papaya (papaya)
Pathway
cpap03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cpap00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
110825280
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cpap03021
]
110825280
03019 Messenger RNA biogenesis [BR:
cpap03019
]
110825280
Transcription machinery [BR:
cpap03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
110825280
Messenger RNA biogenesis [BR:
cpap03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
110825280
U7-dependent histone pre-mRNA processing factors
110825280
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
Motif
Other DBs
NCBI-GeneID:
110825280
NCBI-ProteinID:
XP_021911423
LinkDB
All DBs
Position
Unknown
AA seq
1333 aa
AA seq
DB search
MAAAVSTDQALSLLAAANNHGDLAVKLSSLKQVKDILSSVGPSLAAEFFPFLVELQSSRE
SLVRKFLLEVIEEIGLKAIEHSSVLVPVLLKFLRDEDSSVARQSIVSGTNFFCSVLEEMA
LQFHRNRKIERWLEELWTWMGKFKDAVFTIALEPGSIGTKVLALKFLETFVLVFTSDAIN
SEKLINEGSRRVFNISWLIGGHPNLDPIMLMAEANRMLGILIDLLQSSSSLPGALTITVV
NCLAAIARKRPVHYNTILSALLDFNPNLETVKGYHGVSIQYSIRTAFLGFLRCIYPVILE
SRDKLLRALRAMNAGDAADQVIRQVDKMIKNNERASRETRVGRDDQLSSQFPVPGDLLKK
RSVPQDIEDQSNGLEIASKRTCYGPNAHLTAPVQMSDPGQDSISANGMPPNVSHLDGDLT
PVEQMIAMIGALLAEGERGAESLEILISKLHPDLLADIVITNMKHLPKSPPPLTRLGSSM
PPARLVCSLSGPAQLVAPSPTNSVQSPVLPAKLPLSSSTAVSASLSDMPAVSSFATDSKR
DPRRDPRRLDPRRVGTAAVASSIPTMEDANSVQSEIDDFLSLNKPSLPPVVRAVEKAPAL
LVANLKNDDSISELPLVSGVDKPDARDEVLSSPEEMVPVAEINASSDHPVSPLRAVDEDM
AEVKLSNVEMKLDSDNSSLLEYDQHSHAISNMPASEEICQELPLLPSYVKLTKEQEKNVR
KLAVERIIGLCKNIHRLDYSQMRMALLARLVAQIDADDDLXTMLKEHIIVDYREQKGHEL
VLHVLYHLHSLMVLGSVENSSYAAVAYEKFLLAVAKSLLSTLPASDKYFSRLLGEVPVLP
ESALKLLDDLCYSNVHDLNGKEVRDGERVTQGLGAVWSLILGRPNNRQACLAIALKCAVH
SQDDIRAKSIRLVANKLYQLSYIAEDIEQFATNMLLSAVNQEASATEQRAEQEVGSQNPS
ISGSQVSETGTSEGDSTRDAQPPTQNVSTMSFPEAQRLISLFFALCTKKPSLLQLIFDIY
GEAPKTVKQAFHRHVPILIRALGSSYSELLHIISDPPQGSENLLTLVLQILTQETTPSSE
LIAAVKHLYETKLKDVMILIPMLSSLSKNEVLPIFPRLVNLPLDKFQMALAHILQGSAHT
GPALTPAEVLVAIHDISPERDGLPLKKIMDACSACFEQRTVFTQQVLAKALNQMVDQTPL
PLLFMRTVIQAIDAFPTLVDFVMEILSKLVIKQVWRLPKLWVGFLKCVSQTQPHSFPVLL
QLPSPQLEGALNKYTSLRGPLAAYANQPSIRPSVPRSTLAVLGLVNEPQMQQQRVSRLHP
SDASSSVNGTTLT
NT seq
4002 nt
NT seq
+upstream
nt +downstream
nt
atggcggctgcagtttctacggaccaagcgctctctctgctcgcggcggcgaacaaccac
ggagatttggctgtgaagctctcttcgttgaaacaagtcaaagatatcttgtcatctgtt
gggccttctttagctgccgagttttttcccttccttgtcgagctccaatcgtctagggaa
agtcttgttcggaaatttctcctcgaggtgattgaggagattggtttgaaagcaattgag
cattcttcagtactggtgcctgtcttactgaaatttttaagagacgaggactcttctgtt
gcaaggcaatctattgttagtggcacaaatttcttctgcagcgttttggaggagatggcg
ttgcagtttcaccggaatcgtaagattgaacggtggcttgaagaactatggacatggatg
ggtaaattcaaggatgctgttttcaccattgcattggagcctgggtccattgggacgaag
gtgctggccctgaaatttttggaaacatttgttttagtttttacatcagacgccattaat
tctgaaaaacttatcaatgaaggaagtagacgagtgtttaatatatcttggttaattggt
ggtcaccccaatctggatccaattatgctaatggcagaagcaaataggatgcttggcatt
ttaatcgatttgttgcaatcatcaagtagtcttccgggtgcattgacaattactgttgtc
aattgtcttgcagccatagcaaggaagaggcccgtccactataacactattctttcggcc
ttgcttgatttcaatccaaaccttgagacagtaaagggatatcatggtgtcagtatccag
tattcgataagaactgcctttctaggattcctaagatgtatttatcctgtcattttagag
tcaagagataaactgcttagagccttgcgagcaatgaatgctggggatgctgctgatcaa
gttatccgtcaagtagataaaatgattaagaataatgagcgtgcatctcgagaaactcgg
gtaggccgggatgatcagctgtccagccagttccctgttccaggggatttgttgaagaaa
agatctgtgcctcaggatattgaagaccaaagcaatggtcttgagattgcttctaagcgc
acttgctatggtcctaatgcacacttgacagcaccggttcaaatgagtgatcctgggcaa
gattctatttctgctaatggaatgcctcctaatgtttctcatttggatggtgatttgact
cctgttgaacaaatgattgccatgattggggcattgcttgctgaaggagaaagaggggct
gaatctctcgaaattctaatttcaaaacttcatcctgatctgctggcagatattgtgata
actaacatgaagcacttgcctaagagccctccacctttaacgcgccttgggagcagcatg
ccaccagctcgtttagtttgttctttgagtggtccagcacagcttgtggccccatctcca
acaaattctgtgcagtctccagttctccctgccaagctccctctttcctcatcaactgca
gttagtgcatcactgtctgatatgcccgctgtcagtagttttgctacagattctaaacgt
gatccaagacgagatcctcggcgcctagatccccggcgtgtgggcactgctgctgtagca
tcatcaatacctaccatggaggatgcgaactctgtgcaatcagagattgatgattttctc
tccttaaataagccatcattgccacctgttgtgcgagctgtagagaaggctcctgcactt
ttggttgccaacctcaaaaatgatgatagtatttcagagcttccattggtttcaggagtt
gacaaacctgatgccagagatgaggtattgtcttcccctgaagaaatggttcctgttgca
gagatcaatgcttcttcagatcacccagtttctcctcttcgagcagttgatgaagatatg
gctgaagtaaagttgtcaaatgttgaaatgaaacttgatagtgataattcctcactccta
gaatatgatcagcattctcatgccatatcaaatatgcccgcatctgaggaaatctgtcag
gaattacctctgcttccttcatatgtcaaactgaccaaagagcaggaaaagaatgtaaga
aaattggctgttgaaaggattattggcttgtgtaagaatattcacaggttagactatagc
caaatgcgaatggcattgcttgcccggctggtggctcagattgatgctgatgatgacttg
ntcacgatgctaaaggaacatattattgttgattatcgagagcaaaagggacatgaactg
gtattgcatgttctgtaccatctgcattctctcatggttttgggttctgttgagaactct
tcctatgctgctgttgcatatgagaaattcctcttggcagtggcaaaatcattgctcagc
actcttccagcttcagacaagtattttagtagacttctcggtgaagttccagttttgcct
gagtctgctttgaaactattagatgatctatgctattctaatgttcatgatcttaatgga
aaagaggttcgtgatggtgagcgtgtcactcagggcctgggtgctgtatggagtttaatt
ttggggcgtccaaataatcggcaagcctgcttagctatagctttaaagtgtgctgttcat
tcacaagatgacattcgagcaaaatcaattcggctggttgcaaacaaactctatcagcta
agctacatagcagaggatattgaacaatttgcaacaaatatgttactgtctgctgtaaat
caggaagcttcagccactgagcaaagagccgaacaggaggttggaagccagaacccatct
attagtggctcccaagtttctgagactggaacttcagaaggtgactccacaagggatgct
caacctccaacacagaatgtttcaaccatgtcctttcctgaagctcaaagactcatctct
ttattttttgctttatgtacaaagaaacctagtctccttcaacttatatttgacatttat
ggggaagctccgaaaactgtaaaacaggcttttcatcggcatgtccctattcttataagg
gctttaggttcatcatattctgagctgctccatataatttctgacccaccacaaggaagt
gaaaatcttttgaccctggtgctgcaaatattgacacaagagactacgccttcttctgaa
ctaatagctgctgttaaacatttatatgagaccaaactaaaggatgtcatgattcttatt
ccaatgctatcatcactttccaagaatgaggttttgcctattttccctcggcttgtcaac
cttccattagataagttccagatggcgcttgcgcacatactacagggttctgctcataca
ggtccagctttaacacctgctgaagtactagttgccatccatgacatctctcccgagaga
gatggtcttccactcaaaaagataatggatgcttgttcggcatgttttgagcaacgtaca
gttttcacacagcaggtcttggcaaaggccttaaatcagatggtcgatcagacacctctg
cctctactcttcatgagaactgtaattcaagcaatcgatgcttttccaactctggtcgat
tttgttatggaaatcctctccaaacttgtgatcaaacaggtctggagactaccaaagttg
tgggttggtttcctgaaatgtgtttctcaaacgcagccacattcttttccagtattacta
cagttaccatctccacaacttgaaggtgctctgaacaaatacactagcctcagaggtcct
ctagctgcttatgccaaccaaccaagtattagaccttcagtgccaagatccacacttgct
gtacttggtcttgtgaatgaaccacaaatgcaacaacaacgtgtctcacggttgcaccct
tcagatgcaagctcttctgtgaatgggacgacattaacgtga
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