Carica papaya (papaya): 110825738
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Entry
110825738 CDS
T05151
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 2
KO
K14402
cleavage and polyadenylation specificity factor subunit 2
Organism
cpap
Carica papaya (papaya)
Pathway
cpap03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cpap00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
110825738
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpap03019
]
110825738
Messenger RNA biogenesis [BR:
cpap03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
110825738
U7-dependent histone pre-mRNA processing factors
110825738
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Lactamase_B_6
CPSF100_C
Beta-Casp
RMMBL
Lactamase_B
Lactamase_B_2
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-GeneID:
110825738
NCBI-ProteinID:
XP_021911924
LinkDB
All DBs
Position
Unknown
AA seq
740 aa
AA seq
DB search
MGTSVQVTPLCGVYNENPLSYLVSIDGFNFLVDCGWNDQFDPSFLQPLSKIASTIDAVLL
SHSDTLHLGALPYAMKQLGLSAPVYSTEPVYRLGLLTMYDQYLSRKQVSEFDLFTLDDID
SAFQNVTRLTYSQNYHLSGRGEGIVIAPHVAGHLLGGTVWKITKDGEDVIYAVDYNHRKE
RHLNGTVLQTFARPAVLITDAYNALKNQPPRQQRDKEFLDTISKTLETGGNVLLPVDTAG
RVFELLLILEQHWAQKSFGYPIFFLTFVASSTIDYVKSFLEWMSDSVAKSFETSRDNAFL
LKHVHLLINKSELDNVPDGPKVVLASMASLETGFSHDIFVEWAMDVKNLVLFTERGQFGT
LARMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQNRLKKEEALKATLIKEEEVKVSHG
PDKNLVDPMIIDTNSTHTSLDVVSSHGGRYRDILIDGFVPPSSSIAPMFPFYENTSEWDD
FGEVINPDDYVSKDEEMDQAAMQAGGTMDGKLDEGSAGLILDTRPSKVISNELTVQVKCS
LIYMDYEGRSDARSIKSMLAHVSPLKLVLVHGSAEATEHLKQHCLKHVCPHVYAPQIEET
IDVTSDLCAYKVQLSEKLMSDVLFKKFGDYEIAWVDAEIGKTENDTLSLLPISTTAPPHK
SVLVGDLKMADFKQFLSSKGVQVEFAGGALRCGEYVTLRKVGHAGQKGGGSGTQQIVIEG
PLCEDYYKIREYLYSQFYLL
NT seq
2223 nt
NT seq
+upstream
nt +downstream
nt
atggggacatcagtgcaggttaccccattatgtggagtatacaatgagaacccgttgtct
tacttggtctctattgatggcttcaatttcttggttgactgtggctggaatgatcagttc
gatccctcattcctccaacctctctccaagatagcttctacaatagatgcagtattgctt
tcacattcagatactcttcatcttggggccctgccctatgccatgaaacaacttggcctc
tcagctccagtttattccactgagcccgtgtacagattaggtctcctcaccatgtatgat
cagtatctctcccggaagcaagtttcagaatttgatttatttacattggatgacattgat
tctgctttccaaaatgtgacaaggctgacgtactcacagaattatcatctgtctggaaga
ggagagggaattgttattgccccccatgtggctggacatctcttgggaggtactgtgtgg
aaaataacaaaggatggagaagatgtcatctacgctgttgattacaatcataggaaagag
aggcatttgaatggaactgttctacaaacttttgcccggcctgctgtcctaataactgat
gcctacaatgctttgaagaatcaacctccaagacaacaaagggacaaagaattcctggat
accatttcaaagacccttgaaactggtggcaatgtattactaccagttgatactgctggg
agagtgtttgaacttctgttgatactggaacagcattgggcacagaagtcttttggctat
cccattttctttcttacttttgttgcatctagcacaattgactatgtgaagagtttcctt
gagtggatgagtgattctgtagcaaagtcttttgaaacttctcgagataatgcctttctt
ttgaagcatgtacatcttttgattaacaagagcgaactagataatgttccagatgggcca
aaggttgttctagcgtccatggctagtctggaaacagggttttcccatgatatatttgtg
gaatgggctatggatgttaagaatcttgttctttttactgaaagaggccagtttggcact
ttagctcgcatgcttcaggctgatccacctccaaaagctgttaaagtcaccatgtccagg
agggttcctttggttggggaggagttaattgcttatgaagaagaacaaaaccgactgaaa
aaggaagaagctttaaaagctactctcatcaaagaggaggaagtgaaagtatctcatggg
cctgataagaatttggtagacccaatgattatagatactaatagtacacatacttcacta
gatgttgtcagttctcacgggggtagatatcgagacatactaattgatggttttgtccct
ccttcctccagtattgctccaatgtttcccttctatgaaaatacatctgagtgggacgac
tttggtgaggtaatcaatcccgatgattatgtaagtaaggatgaggagatggaccaggca
gctatgcaagctggtggcactatggatggtaaacttgatgaaggctctgctggcttgata
cttgatactaggccttcaaaagttatatctaatgagttaactgtgcaagtgaaatgttca
ctaatttacatggattatgagggacgttctgatgctcgctctatcaagtcaatgcttgct
catgtttctcccctaaagcttgttttggtacatggatcagctgaggcaacagagcacttg
aaacaacattgcttgaaacatgtttgtcctcatgtttatgctccccagattgaagaaact
attgacgttacctctgatctatgtgcctacaaggtacaactttctgaaaagctgatgagt
gatgtgctctttaagaagtttggagactatgaaatagcatgggttgatgctgaaataggg
aagacagagaatgatacactgtctttacttcccatctcaaccactgctccgccacataag
tctgtccttgttggtgatttaaaaatggctgatttcaaacagtttctttctagcaagggt
gtccaggtagaatttgcgggcggggcattgagatgtggtgaatatgtcacattacgtaaa
gttgggcatgctggacagaagggtggaggctctgggacacagcaaattgtcatagaaggt
cctttgtgcgaggattactataagattagggagtacctatactcacaattttatttgctt
tga
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