Carica papaya (papaya): 110826217
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Entry
110826217 CDS
T05151
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 56
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
cpap
Carica papaya (papaya)
Pathway
cpap03013
Nucleocytoplasmic transport
cpap03015
mRNA surveillance pathway
cpap03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cpap00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
110826217
09122 Translation
03013 Nucleocytoplasmic transport
110826217
03015 mRNA surveillance pathway
110826217
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpap03019
]
110826217
03041 Spliceosome [BR:
cpap03041
]
110826217
Enzymes [BR:
cpap01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
110826217
Messenger RNA biogenesis [BR:
cpap03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
110826217
Spliceosome [BR:
cpap03041
]
Complex C
Other components
EJC/TREX
110826217
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
110826217
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
Motif
Other DBs
NCBI-GeneID:
110826217
NCBI-ProteinID:
XP_021912509
LinkDB
All DBs
Position
Unknown
AA seq
428 aa
AA seq
DB search
MGETRDNDAYEEELLDYEEEEEKAPDSVTSKVNGEAAKKGYVGIHSSGFRDFLLKPELLR
SIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPTPGQVIALV
LCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPHIVVGTPGRILA
LAREKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPV
CKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSEMEKNRKLNDLLDALDFNQVVIFVKSVN
RAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGHKRILVATDLVGRGIDIERVNI
VINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDVLNQVQERFEVDIKELPEQI
DTSTYMPS
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atgggagaaaccagggacaacgatgcctacgaggaggagcttctcgactatgaggaagaa
gaagagaaagcccccgactccgtcacctccaaagtcaatggggaggccgccaagaaaggt
tacgttggaatacacagttcaggattcagagacttccttttgaaaccagagcttcttcgg
tctattgtagactctggatttgagcatccttctgaagtgcaacatgaatgcattcctcaa
gctatcctgggcatggatgtcatttgccaagctaaatcggggatggggaagacagcagtt
tttgttttgtctactttacagcaaattgaaccaaccccaggccaagtcattgcgcttgtt
ctatgtcatactagggagttagcataccagatctgtcatgagttcgagaggttcagtact
tacttgcctgatatcaaagttgcagtcttttatggtggagtcaatatcaaaattcacaag
gatttgctgaaaaatgaatgtcctcacattgttgtcggaacgcctggtagaattttggcc
ctggctagagaaaaggatctttctttgaagaatgtgaggcatttcatccttgatgaatgt
gataagatgcttgaatcacttgacatgaggagagatgttcaggaaatcttcaagatgacc
ccccatgacaaacaagttatgatgttctctgcaactctcagcaaagaaatccgcccggtt
tgcaagaaatttatgcaagatccaatggaaatatatgttgatgatgaggccaaattgacc
ctccatggtctagtacagcactacatcaaattgagtgagatggagaaaaaccgcaagttg
aatgacctcctcgatgcattggacttcaatcaagtagttatttttgtcaaaagtgtgaac
agggcagccgagttgaacaagttgcttgttgagtgtaattttccctctatctgcattcat
tctggcatgtcccaggaggaaaggttgactcgctacaagggtttcaaggaggggcataaa
cgaattcttgttgcaactgatttggttggtagaggaattgacattgaacgtgtaaacatt
gtcatcaactacgacatgccggattctgctgacacttaccttcacagggtaggtagagct
ggtagattcggcaccaaaggtcttgcaatcacgtttgtttcgtctgcttcagactccgat
gtactcaatcaggttcaagagaggtttgaggtggacataaaggagctgccagagcagatt
gatacatcaacatacatgccatcttaa
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