Citrobacter pasteurii: CUC49_08430
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Entry
CUC49_08430 CDS
T05874
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
cpar
Citrobacter pasteurii
Brite
KEGG Orthology (KO) [BR:
cpar00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpar03019
]
CUC49_08430
Enzymes [BR:
cpar01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
CUC49_08430
Messenger RNA biogenesis [BR:
cpar03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
CUC49_08430
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
HA2_N
AAA_22
AAA_19
nSTAND3
T2SSE
NACHT
ResIII
PhoH
NTPase_1
AAA_16
SLFN-g3_helicase
AAA_23
Motif
Other DBs
NCBI-ProteinID:
AYL61666
LinkDB
All DBs
Position
complement(1741023..1744925)
Genome browser
AA seq
1300 aa
AA seq
DB search
MTEQQKLTFNMLQQQLDSLMLRDRQRFARRLHGVKKVKNPDAQQAIYQEMAKEIAQAAGK
VVLREAARPEITYPENLPVSQKKQDILDAIRDHQVVIVAGETGSGKTTQLPKICMELGRG
VKGLIGHTQPRRLAARTVANRIAEELQTEPGGCIGYKVRFSDHVSDNTMVKLMTDGILLA
EIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSKH
FNNAPIIEVSGRTYPVEVRYRPIVEDADDTERDQLQAIFDAVDELGRESQGDILIFMSGE
REIRDTADALNKLDLRHTEVLPLYARLSNSEQNRVFQSHSGRRIVLATNVAETSLTVPGI
KYVIDPGTARISRYSYRTKVQRLPIEPVSQASANQRKGRCGRVSEGICIRLYSEDDFLSR
PEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRLLEELGAITTDEQ
ATAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQDPRERPMDKQQA
SDEKHRRFHDKESDFLAFVNLWNYLGEQQKALSSNQFRRQCKLDFLNYLRVREWQDIYTQ
LRQVVKELGIPVNSEPAEYREIHVALLTGLLSHIGMKDADKQEFTGARNARFSIFPGSGL
FKKPPKWTMVAELVETSRLWGRIAARIDPEWVEPVAQHLIKRSYSEPHWERAQGAVMATE
KVTVYGLPIVAARKVNYSQIDPVLSRELFIRHALVEGDWQTRHAFFRDNLKLRAEVEELE
HKSRRRDILVDDETLFEFYDQRISHDVVSARHFDSWWKKVSRETPDLLNFEKSMLIKEGA
EKISKLDYPNFWHQGNLKLRLSYQFEPGADADGVTVHIPLPLLNQIEESGFEWQIPGLRR
ELVIALIKSLPKPVRRNFVPAPNYAEAFLGRVTPLELPLLDSLERELRRMTGVTVDRDDW
HWDQVPDHLKITFRVVDDKNRKLQEGRSLQDLKDALKGKVQETLSAVADDGIEQSGLHIW
SFGQLPESYEQKRGNYKVKAWPALVDERDSVAIKLFDNPLEQQQAMWCGLRRLLLLNIPS
PIKYLHEKLPNKAKLGLYFNPYGKVLDLIDDCISCGVDQLIDANGGPVWTEEGFAALHEK
VRAELNDTVVEIAKQVEQILTAVFNINKRLKGRVDMTMALGLADIKAQMGGLVYRGFVTG
NGFKRLGDTLRYLQAIEKRLEKLAIDPHRDRAQMLKVDSVQQAWQQWFNKLPPARREDDD
VKEIRWMIEELRVSYFAQQLGTPYPISDKRILQAMEQITG
NT seq
3903 nt
NT seq
+upstream
nt +downstream
nt
atgacagaacaacaaaaattaaccttcaacatgctgcagcaacagctggactcactgatg
ctgcgcgacagacagcgttttgcccgccgcctgcacggcgtgaagaaggttaaaaatcct
gatgcacaacaggccatttaccaggagatggcgaaagagatcgcgcaggcagcaggtaaa
gtcgtgctgcgcgaagcggcgcgtccggagattacctatccggaaaacctgcccgtcagc
cagaaaaaacaggatattctggacgcaattcgcgaccatcaggtggtgattgtggctggc
gagaccggctcggggaaaaccacccagttacccaaaatctgtatggaactggggcgcggg
gtaaaagggctgatcggccatacccagccgcgtcgtctggcggcgcgcaccgtggcgaac
cgtattgcggaagagctgcagaccgagccgggcggctgtattggttataaagtgcgtttc
agcgatcatgtcagtgataacactatggtcaagctgatgacggacggtatcctgctggcg
gaaattcagcaggatcggctgctgatgcagtacgacaccatcatcatcgatgaagcgcat
gaacgcagtctgaatatcgattttctgctcggctatttgaaagaactcctgccgcgtcgt
ccggatctcaaaattattatcacttcggcgaccatcgacccggagcgtttttcaaagcat
ttcaataacgcgccgattatcgaagtctccggtcgaacgtacccggtggaagtgcgttat
cgcccgattgttgaagatgcagatgacaccgagcgtgaccaactgcaggcgatttttgat
gccgtagatgagttaggccgtgaaagtcagggcgatattctgatcttcatgagcggcgaa
cgtgaaatccgtgataccgccgatgccctgaataagctggatttacgccacaccgaagtg
ttgccgctgtatgcgcgtctttcaaacagtgagcagaaccgtgtattccagtcgcacagt
ggtcgccgtatcgtgctggctaccaacgtggcggaaacctcgctaaccgtgccggggatc
aaatatgtaattgacccgggcactgcgcgtatcagccgttacagctaccgtactaaagtc
cagcgtttgccgattgaaccggtgtcgcaggcttctgcgaaccagcgtaaaggccgctgc
ggtcgtgtttcggaagggatctgtattcgcctgtattccgaagacgatttcctgtcgcgc
ccggagtttaccgacccggagatcctgcgtaccaacctggcatccgttattttgcagatg
actgcgctgggactgggggatatcgcggcattcccgttcgttgaagcaccggataaacgc
aatattcaggacggggtacgcctgctcgaagagttgggggcgataaccaccgatgaacag
gcaaccgcgtataagttaacgccgttgggtcgtcaactgtcgcaactgccggtggatccg
cgtctggcgcgcatggtgctggaagcgcaaaaacatggctgcgtacgtgaggcgatgatc
attacctcggcgctgtccattcaggatccgcgcgagcgtccaatggacaagcaacaggct
tctgacgagaaacaccgccgcttccacgacaaagagtctgatttcctcgcgtttgtgaac
ctgtggaactatcttggcgagcagcaaaaagcgctgtcgtcaaaccagttccgtcgccag
tgcaaacttgattttctgaactacctgcgcgtgcgagagtggcaggatatctacacgcaa
ctgcgccaggtagtgaaagagttgggtattccggttaacagcgaacctgctgagtatcgg
gaaattcacgttgcgctgttgaccgggttactctcgcatatcgggatgaaagatgccgat
aaacaggaatttaccggcgcgcgtaacgcccgcttctcgatcttccccggctctgggttg
tttaaaaaaccaccgaaatggacgatggtggcggagttggtggaaaccagccgcctgtgg
ggacgtattgccgcacgtatcgatcccgagtgggtggagccggttgcccagcatctgatc
aaacgttcatacagtgaaccgcactgggaacgcgcgcagggtgctgtaatggcgacagaa
aaggtcaccgtttacggcttaccgattgtggccgcccgtaaggtgaactacagccagatc
gatccagtcctgtcgcgtgaactgttcatccgccatgcgttggtggaaggcgactggcaa
actcgccatgcgtttttccgtgacaacctcaagctgcgtgcggaagtggaagagttagag
cacaaatcacgccgtcgcgacattctggtcgatgatgagacgctgtttgagttttacgac
cagcgcatcagccatgatgtggtttctgcccgccactttgacagctggtggaagaaggtt
agccgcgagacaccggatctgctcaactttgaaaagagcatgctcatcaaagagggcgcg
gagaaaatcagcaagctggattacccgaacttctggcatcagggcaatctcaaactgcgc
ctgagctatcagtttgaacccggcgctgatgcggatggcgtgaccgtgcatattccgctg
ccgctgcttaaccagatcgaagagagcggttttgaatggcaaattccggggctgcgccgt
gaactggtgatcgccctgattaaatcactgccaaaaccggtacggcgtaactttgtgccg
gcaccgaactatgcggaagcatttttaggtcgtgtgacgccgctggaactgccgctgctg
gattcgctggagcgtgaactgcgccgcatgaccggcgtcaccgttgaccgtgacgactgg
cactgggatcaggtgcccgatcacctaaaaatcaccttccgggtcgtggatgataagaac
aggaagctgcaggaagggcgttcgctgcaggatttgaaagatgcgctgaagggcaaagtt
caggaaacgctgtctgcggtggcggatgacggtattgaacagagcggattgcacatctgg
agcttcggtcaactaccggaaagttacgagcaaaaacgcggcaactataaagtcaaagcg
tggcctgcgctggtggatgagcgtgacagcgttgccatcaaactgtttgataatccgctg
gagcaacagcaggcgatgtggtgcggtttacgccgcctgttgttgctgaatattccatca
cctatcaaatatttacacgagaaactgcctaataaagcgaagctggggctgtactttaac
ccgtacggtaaagttctggatttgattgacgactgtatctcctgcggtgtggatcagtta
attgacgccaacggtggtccggtgtggaccgaagaaggttttgcggcgttgcatgaaaaa
gtgcgggctgaactgaacgatacggtggtggagattgcgaagcaggtcgaacagatcctg
accgcagtgtttaatatcaacaaacgtctgaaagggcgcgtggatatgaccatggcgcta
gggcttgcggatatcaaagcgcaaatgggcggactggtgtatcgcggatttgttaccggc
aacggtttcaaacgtctgggcgatacgttgcgttatttgcaggccattgaaaaacggctg
gagaaactggccatcgatccgcaccgcgatcgcgcgcagatgctgaaagtggacagcgtg
cagcaggcctggcagcagtggttcaataaactgccgcccgcgcgccgcgaagatgacgat
gtcaaagagatccgctggatgatagaagagctgcgcgtcagctactttgcccaacagctt
ggcacgccgtatccgatttcggataagcgtatcctgcaggcgatggagcagattacgggg
tga
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