Citrobacter pasteurii: CUC49_08860
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Entry
CUC49_08860 CDS
T05874
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
cpar
Citrobacter pasteurii
Brite
KEGG Orthology (KO) [BR:
cpar00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cpar03032
]
CUC49_08860 (topA)
03400 DNA repair and recombination proteins [BR:
cpar03400
]
CUC49_08860 (topA)
Enzymes [BR:
cpar01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
CUC49_08860 (topA)
DNA replication proteins [BR:
cpar03032
]
Prokaryotic type
DNA Topoisomerases
CUC49_08860 (topA)
DNA repair and recombination proteins [BR:
cpar03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
CUC49_08860 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_Ribbon_Topo
Zn_ribbon_bTOP1
Toprim
Zn_ribbon_Top1
Zn_ribbon_recom
CK_II_beta
Toprim_4
LRV_FeS
DUF4795
Motif
Other DBs
NCBI-ProteinID:
AYL61744
LinkDB
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Position
complement(1823718..1826315)
Genome browser
AA seq
865 aa
AA seq
DB search
MGKALVIVESPAKAKTINKYLGNDYVVKSSVGHIRDLPTSGSATKKSADSTSTKTAKKPK
KDERGALVNRMGVDPWHNWDARYEVLPGKEKVVSELKQLAEKADHIYLATDLDREGEAIA
WHLREVIGGDDTRYSRVVFNEITKNAIRQAFEKPGELNIDRVNAQQARRFMDRVVGYMVS
PLLWKKIARGLSAGRVQSVAVRLVVEREREIKAFVPEEFWEIDANTTTPGGDALPLEVTH
QNDKPFRPVNREQTLAAVSLLEKARYSVLEREDKPTSSKPGAPFITSTLQQAASTRLGFG
VKKTMMMAQRLYEAGYITYMRTDSTNLSQDAVTMVRDYISDNFGKKYLPESANQYASKEN
SQEAHEAIRPSDVAVQAESLKDMEADAQKLYQLIWRQFVACQMTPAKYDSTTLTVGAGDF
RLKARGRILRFDGWTKVMPALRKGDEDRILPAVEKGDMLTLIELTPAQHFTKPPARFSEA
SLVKELEKRGIGRPSTYASIISTIQDRGYVRVENRRFYAEKMGEIVTDRLEENFRELMNY
DFTAQMEDSLDQVANHEAEWKGVLDNFFSDFTQQLDKAEKDPEEGGMRPNQMVLTSIDCP
TCGRKMGIRTASTGVFLGCSGYALSPKERCKTTINLVPENEVLNVLEGDDAETNALRAKR
RCQKCGTAMDSYLIDPKRKLHVCGNNPTCDGYEIEEGEFRIKGYDGPVVECEKCGSEMHL
KMGRFGKYMACTNDECKNTRKILRNGEVAPPKEDPVPLPELPCEKSDAYFVLRDGAAGIF
LAANTFPKSRETRAPLVEELYRFRDRLPEKLRYLADAPQTDPDGNKSMVRFSRKTKQQYV
AAEKDGKATGWSAFFVDGKWVEGKK
NT seq
2598 nt
NT seq
+upstream
nt +downstream
nt
atgggtaaagctcttgtcatcgttgagtccccggcaaaagccaaaacgatcaacaagtat
ctgggtaatgactacgtggtgaaatccagcgtcggtcatatccgtgatttgccgactagt
ggctcagcaactaaaaagagcgccgactcaacctccaccaaaacggctaaaaagcccaaa
aaggatgaacgtggcgctctcgtcaaccgcatgggcgttgacccgtggcacaactgggat
gcgcgctatgaagtgctgcctggtaaagagaaagttgtctctgagctgaaacaactggct
gaaaaagccgaccacatctatctcgcaaccgaccttgaccgcgaaggggaagccattgcc
tggcacctgcgggaagttatcggtggcgacgacacccgctacagccgcgtggtgtttaac
gaaattactaaaaatgctattcgtcaggcgtttgaaaaaccgggcgagttgaacatcgat
cgtgttaatgcgcaacaggctcgccgctttatggaccgtgttgtgggctatatggtgtcg
ccgctgctgtggaaaaaaattgcccgtggcctgtctgctggccgcgtacagtcggttgcc
gtgcgtctggtggttgagcgtgaacgcgaaatcaaggcatttgtacccgaagagttctgg
gaaattgatgccaataccacgacgccaggcggcgatgcgttaccgctcgaagtgacgcat
cagaacgataaaccgttccgtccggttaatcgcgagcaaacactcgcggcagtaagcctg
ctggaaaaagcgcgctacagcgttctggaacgtgaagataagccgaccagcagcaagccg
ggcgcgccgttcatcacctccacgctacagcaggctgcgagcacgcgtctgggcttcggt
gtgaagaaaaccatgatgatggcgcagcgcttgtatgaagcgggttacatcacttacatg
cgtactgactcaaccaacctgagccaggatgcagtgactatggttcgcgattacatcagc
gataattttggtaaaaaatatctgccggagagcgcgaaccagtacgccagcaaagagaac
tcgcaggaagcgcacgaagctatccgtccttccgatgtcgccgtacaggcggaatcgctg
aaagatatggaagccgatgcgcaaaaactgtatcagttgatctggcgccagtttgttgcc
tgtcagatgacccctgctaaatatgattccaccacgctgaccgtgggcgcgggtgatttc
cgtctgaaggcgcgcggtcgtattctgcgcttcgatggctggacgaaagtaatgcctgca
ctgcgtaagggtgatgaagatcgcatcttaccggcggtagaaaaaggcgatatgctgacg
cttatcgaactgacgccagcacagcactttactaaaccgcctgcgcgcttcagtgaggct
tcgctggttaaagagcttgaaaagcgtggcattggtcgtccatctacctatgcgtcgatc
atttctacgattcaggatcgcggttatgttcgcgtggagaaccgtcgtttctacgcagaa
aaaatgggtgaaatcgtcaccgatcgtctggaagaaaacttccgcgaactgatgaactac
gatttcaccgcgcagatggaagacagccttgaccaggtggcgaaccacgaagccgagtgg
aaaggtgtgctcgacaacttcttcagcgattttactcagcaactggataaagccgagaaa
gatcctgaagaaggcggtatgcgtccgaaccagatggtgctgaccagcattgattgtccg
acatgtgggcgcaagatgggtattcgtaccgccagcaccggcgttttccttggttgctcc
ggctacgcactttccccgaaagagcgttgcaaaaccaccattaacctggtgccggaaaac
gaagtattgaacgtgctggaaggcgacgacgcggaaacgaacgcattgcgcgccaaacgc
cgctgccagaagtgcggtacggcaatggacagttatcttatcgatcctaagcgtaaattg
catgtgtgtggtaataacccaacctgcgacggctacgagatcgaagagggcgagttccgc
attaagggttatgacggtcctgtcgttgagtgcgagaaatgtggttctgaaatgcacctg
aaaatggggcgtttcggtaaatacatggcatgtactaacgacgagtgtaaaaacacccgt
aagatcctgcgtaacggcgaagtggctccgccgaaagaagatcctgttccgttgccggaa
ctgccgtgtgaaaaatcggacgcgtatttcgtgttgcgtgatggtgcagcaggtattttc
ctggctgcgaacaccttcccgaaatcacgtgaaacccgtgcgccgttagtggaagagttg
tatcgcttccgcgatcgtttgccggaaaaactgcgctatctggccgatgcgccgcagacg
gaccccgatggtaataagtcgatggttcgctttagccgtaaaactaagcagcagtatgtc
gctgcggaaaaagacggtaaagcaaccgggtggtctgcatttttcgttgatggcaaatgg
gtagaagggaagaaataa
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