Citrobacter pasteurii: CUC49_10755
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Entry
CUC49_10755 CDS
T05874
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
cpar
Citrobacter pasteurii
Pathway
cpar03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cpar00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CUC49_10755
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpar03019
]
CUC49_10755
03009 Ribosome biogenesis [BR:
cpar03009
]
CUC49_10755
Enzymes [BR:
cpar01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
CUC49_10755
Messenger RNA biogenesis [BR:
cpar03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CUC49_10755
Ribosome biogenesis [BR:
cpar03009
]
Prokaryotic type
rRNA processing factors
CUC49_10755
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
PNPase_C
S1
Motif
Other DBs
NCBI-ProteinID:
AYL62082
LinkDB
All DBs
Position
2171597..2174857
Genome browser
AA seq
1086 aa
AA seq
DB search
MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY
GAERHGFLPLKEIAREYFPANYSSHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPDGMGLIVRTAGVGKSAEAL
QWDLSFRLKHWEAIQKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVMEMA
RQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALT
AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVE
NRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLS
LSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRTAVNAIETRQNGVRCVIVPNDQME
TPHYSVLRVRKGEETPTLSYLLPKLHEEAMALPTEEEYVERKQPEQPALATFAMPDVPPA
PALQEPAVKAAAPKAAAATAPVAAQPGLISRFFGALKSIFGSSEEVKPVEQPAPKAEEKT
ERQQDRRKPRQNNRRDRNERRDNRDNRGDRDNRNERSENGENRDENRRNRRQAQQQTAET
RDNRQQSSDVADKAKSGDEQQAPRRERNRRRNDDKRQAQQEVKELNLAEQPAQDSEQEER
VRQPQTRRKQRQLNQKVRFTDSAPVEAEAATAAIVAETAVAQSVEQSAPAQRTELAKVDL
PAVVASEQEDNNEARDNNGMPRRSRRSPRHLRVSGQRRRRYRDERYPVQSPMPLTVACAS
PELASGKVWISYPVARTQDMQVEEQREQKLELEQNASVAVEPQAAAAVVEHIVDVPAQAD
VAQPDVSVVETQTVVAETAHPEVIATPVEQQPQIIAESDAPVAEEIAAKAEPVAEVVAEV
VASPVIEEPADVVVSQPEAVEEIVEVVETAPVVEEVAAPQEVVAAPVVETAVVKSDTVAT
RVDAEHLHSHATAPMTRAPAPEYVPEAPRHSEWQRPAFAFEGKGAAGGHSASHQATAPAT
RPQSVE
NT seq
3261 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgttaattaacgcaactcagcaggaagagttgcgtgtcgcccttgtagat
gggcagcgtctgtacgatctggatatcgaaagtcctggacacgagcagaaaaaagccaac
atctataaaggtaaaattacccgtattgaaccgagtctggaagctgcttttgttgattac
ggcgctgaacgtcacggtttcctcccgttaaaagaaattgcccgcgaatattttcctgca
aactacagttcccatggccgccccaacattaaagatgtgttgcgtgaaggtcaggaagtt
atcgttcagatagataaagaagagcgcggaaataaaggcgcagcactgacaacctttatc
agtctggcaggcagctatctggttttgatgccaaacaacccgcgtgcgggcggtatctct
cgtcgcattgaaggcgatgaccgtaccgagttaaaagaagcgctggcaagcctcgaattg
cctgatggcatggggcttatcgtacgtaccgcgggtgtcggtaaatcggccgaagcactg
cagtgggacctgagcttccgtctgaaacactgggaagccattcaaaaagcggctgaaagc
cgtcctgccccgttcctgatccaccaggaaagcaacgttatcgtgcgtgccttccgcgac
tatctgcgccaggacatcggcgaaatcctcatcgacaacccaaaagtcatggagatggcg
cgtcagcacatcgctgcgctgggtcgtccggatttcagcagcaaaatcaaactgtacacc
ggtgaaatcccgctgttcagccactaccagattgaatcccagattgaatccgccttccaa
cgtgaagtgcgtctgccttccggcggctcaatcgttatcgacagcactgaagcgctgact
gctatcgatatcaactccgctcgcgcaacccgcggcggcgatattgaagaaacggcgttt
aacactaaccttgaagctgccgatgaaattgcgcgtcagttgcgtctgcgtgaccttggt
ggcctgatcgtcatcgattttatcgatatgaccccggttcgccaccagcgtgcggtagaa
aaccgtctgcgtgaagccgttcgtcaggacagagcgcgtattcagatcagccatatttct
cgcttcggtctgctggaaatgtcccgccagcgtctgagcccgtcgctgggtgaatccagt
caccacgtctgcccgcgttgctccggcaccggtaccgtacgtgataacgaatcactgtcg
ctgtctattctgcgtctgatcgaagaagaggcgctgaaagagaatacacaggaagttcac
gctattgttcctgtgccgatcgcatcctacctgcttaacgaaaaacgtaccgcggtcaat
gccatcgagacgcgtcagaacggcgtgcgctgtgtgatcgtgccaaacgatcagatggaa
accccgcactactccgtgctgcgtgtacgcaaaggggaagaaacgccgaccctgagctac
ctgctgccgaaactgcacgaagaagcgatggcgttgccgacggaagaagaatacgttgag
cgtaagcaacctgaacaaccggcactcgccactttcgcgatgcctgatgttccgcctgcc
cctgcactgcaggagccagccgtgaaagctgccgcgcctaaagctgctgccgcgaccgca
cctgtcgctgcgcagccgggtttgattagccgtttcttcggcgcgctgaagtccatcttt
ggcagcagtgaagaagtgaaaccggttgaacaaccggcaccgaaagctgaagagaaaacg
gaacgccagcaggatcgtcgcaaaccgcgtcagaacaatcgtcgtgaccgtaacgagcgt
cgtgataatcgtgacaaccgtggtgaccgtgacaaccgtaatgagcgttcagaaaacggc
gaaaaccgcgatgaaaatcgtcgtaatcgtcgtcaggcgcagcagcagactgctgaaact
cgtgacaaccgccagcagtccagcgatgtagcagacaaagcgaaatccggtgacgagcag
caggctccgcgtcgcgaacgcaaccgccgtcgcaacgatgacaaacgtcaggcgcagcag
gaagttaaagagctgaacctggctgaacagcctgcgcaggattccgagcaggaagaacgc
gtgcgtcagccgcagactcgtcgtaaacagcgtcagttgaatcagaaagttcgattcact
gacagcgcgccggttgaagctgaagcggcgaccgcagccattgttgctgaaaccgccgtt
gctcaatctgttgaacagtctgccccggctcaacgtaccgaactggctaaagtcgattta
cccgcagtcgttgcatcagagcaagaagacaacaacgaagcacgtgataataacggtatg
cctcgtcgctcacgtcgttctcctcgccatctgcgcgtaagcgggcagcgtcgtcgtcgc
tatcgtgacgaacgctatccggttcagtcgccgatgccgttaacggttgcctgtgcttct
ccggaattagcgtccggcaaagtctggattagctaccctgttgcccgtactcaggacatg
caggttgaagaacagcgcgaacagaaactggagctggaacaaaacgcatctgtggcagta
gagcctcaagccgctgcagctgtcgttgagcacattgtggatgtccctgcacaggcagac
gtcgcgcaacccgatgttagcgtagtggaaacgcagaccgttgtggctgaaacggcacac
ccggaagtgattgctactccggtcgagcagcaaccgcaaattatcgctgaatctgacgca
ccggttgccgaggagatcgctgcgaaagccgaacctgtggctgaagttgtggctgaagtt
gtggcttcgccggttatcgaagaacctgcggacgtcgttgtctcccagcctgaagcggtt
gaagagattgtcgaggttgtggaaacagcgcctgttgttgaagaggttgcagcgccgcaa
gaagttgttgcagcacctgtcgtcgaaaccgcagtcgttaagtctgacactgtcgcaacc
cgtgttgacgcagaacatcttcacagccatgcgaccgcaccgatgacccgcgctccggct
ccggaatatgtgcctgaagcgccgcgtcatagcgagtggcagcgcccggcattcgccttt
gaaggcaaaggcgctgcaggcggacacagtgccagccatcaggcaaccgcgccagcaacg
cgaccgcagtctgttgagtaa
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