Clostridium pasteurianum BC1: Clopa_0377
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Entry
Clopa_0377 CDS
T02645
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
cpas
Clostridium pasteurianum BC1
Pathway
cpas03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cpas00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Clopa_0377
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cpas03021
]
Clopa_0377
03019 Messenger RNA biogenesis [BR:
cpas03019
]
Clopa_0377
Transcription machinery [BR:
cpas03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
Clopa_0377
Messenger RNA biogenesis [BR:
cpas03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
Clopa_0377
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
S1CSD-TOTE-2
Spore_III_AA
SpoU_sub_bind
NACHT
AAA_25
AAA
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AGK95437
UniProt:
R4JX86
LinkDB
All DBs
Position
380937..382643
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AA seq
568 aa
AA seq
DB search
MFSVDLESRTLVQLKEMAKGLGIKNISKFKKRDLIEEIKKVSPVSIEKDGVVLREKISPK
KDEKAALITNKNKNSDSKNKVDVAVKEKEILKVEADNVPKVIAEGTEVSSNRAENTNNKI
EIVEDKQNVNIRREVNRAETIGNKVEPTKNSMEVARNYERKESQNLKNNFDQSRSTNEKY
VKEEKDDKFKEMVHESNSAKGVLELVDNNNFGFLRGKNYLTGPDDIYVSPSQIRRFNLKT
GDEVEGKVRIPKEGEKFKALLYVQSVNGENPEKAVGRKPFETLVPIYPNKRLKLEKNEKE
LATRLMDIMSPIGKGQRGLIVAPPKAGKTTLLKTVAQSISSNHPEVKLIVLLIDERPEEV
TDMKESIKGEVIYSTFDEEPEHHTKVAYMVLERTKRMIEQGQDVVILLDSLTRLARAYNL
TITPTGRTLSGGLDPGALIMPKKFFGAARNIKEGGSLTILATALIDTGSRMDDMIFEEFK
GTGNMEVHLDRRLQERRIFPAIDIYKSGTRKEKLLLAQEEYDASYLIRKVLYNENSTQSV
TEKLINLLSETKNNKDFVDIINKEKWER
NT seq
1707 nt
NT seq
+upstream
nt +downstream
nt
ttgtttagcgttgacttggaaagcaggacccttgtgcagcttaaggaaatggcaaaaggg
ctgggaataaaaaatatttcaaaatttaaaaagagagatcttattgaggaaattaaaaag
gtttctccggtttctatagagaaagatggagttgtacttagagagaaaatatctcctaaa
aaagatgaaaaagcagctcttattaccaataaaaataagaatagcgattcaaaaaataag
gttgatgttgcagttaaggaaaaagaaatattaaaggtagaagcagacaatgtcccaaag
gtgattgctgagggaactgaagttagcagtaatagagcggaaaatactaacaacaaaata
gaaatagttgaagataaacaaaatgttaatatcagaagagaagttaacagggcagaaaca
attggtaacaaagtggaacctactaagaacagtatggaggttgctaggaattatgaaaga
aaagagtctcaaaatttaaaaaataattttgaccaatcaagaagtactaatgaaaaatat
gtaaaagaagaaaaagatgataaatttaaagaaatggtacatgaatccaattctgccaag
ggagttttagaattagtagacaataataattttggatttttacgtggaaaaaattattta
actggcccagatgacatatatgtatctccttcccagataagaaggttcaatttaaaaaca
ggagacgaagttgagggtaaagttagaatacctaaagaaggtgaaaaatttaaagcactt
ctttatgtacaaagcgtaaatggagagaatccagaaaaagcagtaggcagaaaacctttt
gaaacattagttcctatttatcctaataagagattgaaattagagaaaaatgaaaaagaa
ttggcaacaaggcttatggatattatgtctcctattggaaagggacaaagaggtcttata
gttgcgcctcctaaggctggaaaaactacattattaaaaacagtagcacaaagcatatct
tctaatcatccagaggtcaaattaatagtgcttttaatagatgagagaccagaagaagtt
actgacatgaaagagtctataaaaggcgaagttatatattctacctttgatgaagaacca
gaacatcacacaaaagttgcatatatggttttggaacgtactaagagaatgattgaacag
gggcaagatgttgtaatccttttagatagtttaactagacttgcaagagcttataattta
actataacgcctacaggaagaaccctatctggcggtcttgatcccggtgcattgataatg
ccaaaaaaattctttggggcagctagaaatataaaagaaggtggaagtcttactatactt
gctacagcacttattgatacgggaagcagaatggatgatatgatttttgaagaatttaaa
gggacaggtaatatggaagtacatctcgatagaagacttcaagaaagaagaattttccct
gcaattgatatttataagtctggaactagaaaggaaaagcttcttttagcacaggaagag
tatgatgcatcctatttgattagaaaagtattatataatgaaaatagcactcaaagtgta
acagaaaagctaataaatcttttaagtgaaactaaaaataataaggattttgtggatatt
ataaataaagaaaaatgggaaagataa
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