Clostridium pasteurianum BC1: Clopa_1133
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Entry
Clopa_1133 CDS
T02645
Name
(GenBank) DNA/RNA helicase, superfamily I
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
cpas
Clostridium pasteurianum BC1
Pathway
cpas03420
Nucleotide excision repair
cpas03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cpas00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Clopa_1133
03430 Mismatch repair
Clopa_1133
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cpas03400
]
Clopa_1133
Enzymes [BR:
cpas01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Clopa_1133
DNA repair and recombination proteins [BR:
cpas03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Clopa_1133
MMR (mismatch excision repair)
Other MMR factors
Clopa_1133
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
AAA_19
UvrD_C
UvrD_C_2
SLFN-g3_helicase
Viral_helicase1
PhoH
AAA_30
DEAD
AAA_14
ResIII
nSTAND3
AAA_18
NACHT
HAAS
AAA_16
Motif
Other DBs
NCBI-ProteinID:
AGK96128
UniProt:
R4K0P0
LinkDB
All DBs
Position
1161097..1163223
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AA seq
708 aa
AA seq
DB search
MAETGYIDKDKNDELELQEEKIRLHGVIDIISKEILNYIQKRKDITQYILDSRKKNIEEF
QDDEDKIIEYFDHERFVKEEAFKIIDKRLKELTILELSPYFGRVDFKEDEEDQRIYIGRF
GVTPEGAYEPLVVDWRAPVSSLFYTSSLGKNAYTAPLGQVEADIIKKRQYIIKRKKLMGL
FDSSVDVKDDILQLVLSKNAEEKLKDIVMSIQEEQDNIIRQPRNKIVVVNGVAGSGKTTI
ALHRVAYLLYNHRDTLQDKVLILGPNPIFMEYISSVLPSLGEVGVNQKTYRDFAVELLDV
RQRDIMTTREYMERILKGDSDFIKSVSYKNSDKFIKDLDDFVSSVEKNHYIFADLFFNNK
IIVPKSEIQEMYTKYYSDMPIFRRVKKLKRIIFSKLKDERDSIVREIEQNYRDSISKLTE
DELKLQGTSFDYKRKLKIREVIKTLMDVKKSMTWLGEPSIIELYTSINGTEPYTVDDLTA
LLYLSIKFEGLTIDQEIKHVVIDEAQDYSKLAFKVIKELTDCKGMTIVGDSNQRLIPLEG
EIPFNELDNLIENIETEHFKLNKSYRSTKEIMEYANKFLGHDIIVPLVRSGETVKIFNPK
SEEEFIKTLDNIIKDYTKKEFDSIAVVCRDLDSTDRYGKLLSKNNSLKVIDREDMIYQGG
TVLIPSYLAKGLEFDAVIIVEDEKYTEKDKFMYVMTTRALHELAVVEY
NT seq
2127 nt
NT seq
+upstream
nt +downstream
nt
ttggcagaaacaggatatatagataaagacaaaaatgatgaactggagcttcaggaggaa
aagataagacttcatggtgtaatagacataataagtaaggaaatactaaactatatacaa
aagagaaaagatataactcaatatatattggacagcagaaaaaagaatattgaagaattt
caagatgatgaagataagataatagaatactttgaccatgaaagatttgtaaaagaggaa
gcttttaaaatcatagataagagattgaaagaacttacaatacttgagttatccccttat
tttggacgggttgattttaaagaagatgaggaggatcaaaggatatatataggaagattt
ggagttactccggagggtgcctatgaacccctggtggtagattggagagcacctgtttct
tcactattctatactagcagccttggaaaaaatgcatatactgctccattaggacaggta
gaggcagatataataaaaaaaagacagtatattattaaaagaaagaagcttatggggctg
tttgattcttctgtagatgttaaggatgacatattacagcttgtgttaagcaaaaatgca
gaggaaaagcttaaggatatcgtaatgtccatacaggaagaacaggataatattataaga
cagccaaggaataaaatagtagtggtaaatggagtagcaggtagtggaaaaaccaccata
gcactgcatagagtggcttatcttttatataatcacagagatactcttcaggataaagta
cttattcttgggcctaatcctatatttatggaatatatatcttctgtattgccaagtctt
ggtgaggtaggggttaaccagaaaacctatagagattttgctgtggaacttttagatgta
agacagcgtgatatcatgactactagagaatatatggagagaattttaaagggagatagt
gattttattaaatctgtaagctataaaaatagtgataagtttataaaggacttagatgat
tttgtaagtagtgtagaaaaaaatcactatatatttgcagatttgttttttaacaataaa
attatagttccaaaatcagaaattcaggaaatgtatacaaaatattatagtgatatgcct
atatttagaagagtgaaaaagttaaagagaatcattttttcaaaacttaaggatgagaga
gacagtatagttagagaaatagaacagaattatagagattctataagtaaattgactgaa
gatgaattaaaacttcagggaacatcctttgattacaaaagaaagcttaaaataagagaa
gttataaagacacttatggatgtaaagaaaagtatgacatggcttggagaaccttctata
atagaactatataccagtataaacggtacagaaccttatactgtagatgatttaactgca
ctactgtatctttctataaaatttgaaggcttaactattgatcaggaaataaaacatgta
gttatagatgaggctcaggactatagcaagctggcttttaaagttataaaagagcttaca
gactgcaagggcatgacaatagtaggggacagcaatcagagacttatacctttagaaggt
gaaataccctttaatgaacttgataatttaatagaaaatatagaaacagagcattttaag
ctaaataaaagctatagatcaacaaaggaaataatggaatatgccaataaatttttaggg
catgatataatagttccattagttagaagtggagagactgttaaaatatttaatccaaaa
tcagaagaagaatttattaagactttagataatatcatcaaagactatacaaaaaaagaa
tttgatagtatagctgtagtttgtagggatttggatagtactgatagatacggaaagctt
ttgagtaaaaataattctttaaaggttatagacagggaagacatgatttatcaaggagga
acagttcttattccttcctaccttgccaaaggtcttgagtttgatgcagttataattgtg
gaagatgaaaagtacactgaaaaagataagtttatgtatgtaatgactacaagagctctt
catgaactggcagttgtggaatattaa
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