Clostridium pasteurianum BC1: Clopa_2399
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Entry
Clopa_2399 CDS
T02645
Name
(GenBank) DNA helicase, Rad3
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
cpas
Clostridium pasteurianum BC1
Pathway
cpas03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cpas00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
Clopa_2399
09124 Replication and repair
03420 Nucleotide excision repair
Clopa_2399
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cpas03021
]
Clopa_2399
03036 Chromosome and associated proteins [BR:
cpas03036
]
Clopa_2399
03400 DNA repair and recombination proteins [BR:
cpas03400
]
Clopa_2399
Enzymes [BR:
cpas01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
Clopa_2399
Transcription machinery [BR:
cpas03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
Clopa_2399
Chromosome and associated proteins [BR:
cpas03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
Clopa_2399
DNA repair and recombination proteins [BR:
cpas03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
Clopa_2399
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C_2
DEAD_2
HBB
DEAD
ResIII
PDDEXK_1
Helicase_C
PhoH
IstB_IS21
B
Motif
Other DBs
NCBI-ProteinID:
AGK97262
UniProt:
R4K2D3
LinkDB
All DBs
Position
2427789..2430143
Genome browser
AA seq
784 aa
AA seq
DB search
MDNITKIRISVRDLIEFILRSGDLVSTFAGNNRNIEAIKVHQKIQKNSGDNYNREVAISH
TIIKDDISLEINGRIDGIITKDKVTIIDEIKTTTNDLNNITEDYNRLHWAQVKCYAYFYC
VQNDIKIIDTRLTYYQMNSREIKYLIKSYTLVQLEQFFNEIIDKYIYWAKLQKNWREKRD
LSIKKLIFPYREYRLGQRKLAVAIYTSIKENKNIFVKAPTGIGKTISTIFPGIKALGEGI
ISKIFYVTAKNTTGEEVKKAFLLLAENDLDFKTVWITAKDKICFKEETNCDPELCKYAKG
HFDRINEAITDALNRNIITREVIEKYAEKHSVCPFEFSLDLTNWCDCVVCDYNYVFDPKV
YLRRFFLEKGGDYCLLVDEAHNLVDRARNMYSGELYKKDILDLKNKCKNISSILYKSLNK
INTFLVKERKKCEENNIGVNVQKDPPKDIIKLLNNFIYEAERFLIVNDKCEFKAEILDIY
FKLNSFVRIYEDYSEEYITYSQKIKDDLLLKMFCVDTSEVMKKCLEKVKSTVFFSATLTP
MNYFIKLLGGDNDSYKIRLPSPFKRENLCLLLNDGVSTKYNNRQFTYKEIVSIITNCVSQ
KAGNYFVFFPSYNYMKSVLDIFHEENKNINVVCQKNNMTEEERNNFIALFSENNRETLLG
FVVMGGVFSEGIDLIGEKLSGAIIIGVGLPKISLERNLIKEYFIKNNENGFLYSYVYPGI
NKVLQSAGRVVRTDKDRGIVVLIDERYSESIYKGLLPEEWSHMKKINTFLNKNNNVILEF
WSKK
NT seq
2355 nt
NT seq
+upstream
nt +downstream
nt
atggataatataactaagataaggatatctgtaagggatttaattgaatttattttgaga
agtggggatttagtatccacatttgctggaaataatagaaatatagaggcaattaaagta
catcaaaaaatacaaaaaaattctggcgacaattataatagagaagtagctatttctcac
acaataataaaggatgatatttccttggaaataaacggaagaatagatggaataattaca
aaagataaagttactataattgatgaaatcaaaactactactaatgatctaaataatatt
actgaagattataataggttacattgggcacaggttaaatgttatgcttacttttattgt
gtacagaatgatattaaaattattgatacaaggctaacctattatcaaatgaatagcagg
gaaataaaatacttaattaagtcttatactctagttcaattggaacaattttttaatgag
ataattgataaatatatatactgggcaaaacttcaaaaaaattggagggaaaagagagac
ctatctataaaaaaacttatatttccatatagagaatacagattaggacaaagaaaacta
gcggtagctatttatacttctattaaagaaaataaaaatatttttgtaaaggcacctaca
ggaattggtaagacaatatcaactatttttcctgggattaaggcactaggggaaggtatt
atatcaaaaattttttatgttacagcaaagaataccacaggagaagaggtaaaaaaggct
tttcttcttctagcagaaaatgacctggattttaaaacggtatggattactgcaaaggat
aagatatgctttaaagaagaaactaattgtgatccagagttatgtaagtatgctaaaggt
cattttgacagaataaatgaagctataactgatgcattgaatagaaatataattactaga
gaagtaattgaaaaatatgcagagaaacacagcgtttgtccttttgaattttctttggat
ttaacaaactggtgtgattgtgtagtgtgtgactataattatgtttttgatccaaaagta
tacttaagaagattttttttagaaaagggtggagactattgtcttcttgtagatgaggct
cataatttagtggacagggcaagaaatatgtattcaggagaattatacaagaaagatatt
ttagatttaaaaaataaatgtaaaaatatatcttctattttatataaaagtctaaataag
ataaatacatttttggtaaaggaaagaaaaaaatgtgaggaaaataatattggagtaaat
gtacaaaaagatccacctaaggatataataaagcttctgaataattttatatatgaagca
gaaagatttttaatagtaaatgataagtgtgagtttaaagcagaaattttagatatttat
tttaaattaaattcatttgttaggatttatgaagattatagtgaagaatatattacctat
agccaaaaaattaaagatgatctattattaaagatgttttgtgttgacacatcagaagtt
atgaaaaaatgtttagaaaaagtaaagtctacagtattcttttcagctacactaacacct
atgaattattttataaagttattaggtggagataatgattcctataaaatcagattgcct
tcaccttttaaaagagaaaatttatgtttgctgctaaacgatggtgtatctacaaaatat
aataacagacagtttacttataaagagatagtttccattataacaaattgtgtatctcaa
aaggcaggaaattattttgtgttttttccatcctataattatatgaaaagtgttttggat
atatttcatgaggaaaataaaaatatcaatgtagtatgccagaaaaacaatatgactgaa
gaggaaagaaataattttattgcacttttttctgagaataacagagaaacactacttgga
tttgtagttatgggcggggtgtttagtgaaggtattgatttaataggagaaaaactaagt
ggtgctattattattggagttggtcttcctaaaatatctttagaaagaaatttaattaaa
gaatattttataaaaaataatgaaaatggttttttatattcctatgtctatccgggcata
aataaagtccttcagtctgcaggaagagttgtgagaaccgataaagatagagggattgta
gtattaatagatgaaagatattctgaaagtatttataaaggattattacctgaagaatgg
tcacatatgaaaaaaataaatacttttctaaataagaacaataatgttattttagaattt
tggagtaaaaaatag
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