KEGG   Clostridium pasteurianum BC1: Clopa_2412
Entry
Clopa_2412        CDS       T02645                                 
Name
(GenBank) hypothetical protein
  KO
K12574  ribonuclease J [EC:3.1.-.-]
Organism
cpas  Clostridium pasteurianum BC1
Pathway
cpas03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:cpas00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    Clopa_2412
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cpas03019]
    Clopa_2412
Messenger RNA biogenesis [BR:cpas03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     Clopa_2412
SSDB
Motif
Pfam: RNase_J_b_CASP RNase_J_C Lactamase_B RMMBL Lactamase_B_2 Anti-Pycsar_Apyc1 Lactamase_B_6 UL11
Other DBs
NCBI-ProteinID: AGK97275
UniProt: R4KCC8
LinkDB
Position
2445686..2447353
AA seq 555 aa
MRKERDKIKIMPLGGLNEIGKNITVIEYKDEIAIIDCGLKFPDEEMYGIDIVIPDVTYLV
KNIEKVKGIFLTHGHEDHIGALPYVLKQLNVPVYGTKLTLGIVETKLKEHGLLSIVKLVC
VKPKDIIKLDTMSVEFIRTSHSIADSTAIAIHTPLGVIFHTGDFKIDYTPIDGCVADFAR
FAELGKRGVLLMLADSTNVERSGYTMSESTVGETFQKIFAKATGRIIVATFASNIHRIQQ
VVEAAEKFDRKVAVSGRSMENILAVAIEYGYLTAKEGTMISIDAINRYPADKVAIITTGS
QGEPMSALTRMAASEHKKVNIVDGDMVIISASPIPGNEKLVSRVINQLFKKGADVIYEAL
ADVHVSGHACQEELKLIHTLVKPKFFMPVHGEYRHLKQHGELAARLGMEKKNILIADNGD
VIELTRSSIRKNGSVISGQVFVDGLGVGDVGNIVLRDRKHLSQDGILTVVVTIEKQSGSV
IAGPDIISRGFVYVRESEDLMDEAREIVKNALKECEENHITEWATIKSNIKDGLRLFLYE
KTKRKPMILPIIMEI
NT seq 1668 nt   +upstreamnt  +downstreamnt
atgcgtaaagaaagagacaaaataaaaattatgccattaggtggtttaaatgagattggg
aaaaacataacagttatagaatataaagatgaaatagcaataattgactgtggattgaaa
tttccagatgaagaaatgtatggaatagatatagtcattccagatgtgacctatttagtt
aaaaatattgaaaaagttaaggggatatttttaacgcatggacatgaagatcatattgga
gcacttccctatgttttgaaacaattaaatgttcctgtgtatggaacaaaactcacctta
ggtatagttgaaacaaaactaaaggagcacggtcttttaagcattgttaagcttgtatgt
gttaagccaaaagatattataaaacttgataccatgtcagttgagtttataagaacaagt
catagtatagcggattcaactgctatagctattcatactccacttggtgtgattttccat
accggtgattttaaaatagactatactccaattgatggatgtgttgcggatttcgctaga
tttgctgaattaggtaagaggggagtcttacttatgctagctgacagtactaatgttgaa
agatcaggatacactatgtctgaaagtacagttggagaaacatttcaaaagatatttgct
aaagctactggaagaataatagttgctacttttgcatctaatatacacagaattcaacaa
gtggtggaggcagcagaaaaatttgatagaaaagtagctgtatcaggcaggagtatggaa
aatattttagcggttgccattgaatatggatatctaacagctaaagagggaacaatgatc
agtatagatgctataaataggtatcccgctgacaaagttgcgataataacaaccggaagt
cagggagagcctatgtctgcacttacaagaatggcagcttctgaacacaagaaagtaaat
attgttgatggtgatatggttattatttcagcatcaccaataccaggaaacgaaaaatta
gtttctagagtaataaatcagttatttaaaaaaggtgcagatgttatatatgaagcatta
gcagatgtacatgtatctggtcatgcttgccaggaagaattaaagttaattcatacttta
gttaaaccaaagtttttcatgccagttcatggagagtatagacatttaaaacagcatggt
gagcttgcagcaaggcttggtatggaaaagaaaaatatacttatagctgacaatggagat
gtaattgagcttacaagaagttctataagaaaaaatggcagtgtaatttcaggtcaagta
tttgtagatggactaggtgttggagatgtgggaaatattgttttaagagacagaaaacat
ctatcacaggatggaattctcactgtggttgttactattgaaaaacaaagtggcagtgtt
attgctggaccagatattatttctagaggttttgtatatgtgagagaatcagaagatctt
atggatgaagcaagagaaattgttaaaaatgctctaaaggaatgtgaagaaaatcatata
actgaatgggctacaataaaatccaatataaaagatggtttaaggttattcttatatgaa
aaaactaaaagaaagcctatgatactacctataattatggaaatataa

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