Clostridium pasteurianum BC1: Clopa_2412
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Entry
Clopa_2412 CDS
T02645
Name
(GenBank) hypothetical protein
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
cpas
Clostridium pasteurianum BC1
Pathway
cpas03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cpas00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Clopa_2412
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpas03019
]
Clopa_2412
Messenger RNA biogenesis [BR:
cpas03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Clopa_2412
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
RMMBL
Lactamase_B_2
Anti-Pycsar_Apyc1
Lactamase_B_6
UL11
Motif
Other DBs
NCBI-ProteinID:
AGK97275
UniProt:
R4KCC8
LinkDB
All DBs
Position
2445686..2447353
Genome browser
AA seq
555 aa
AA seq
DB search
MRKERDKIKIMPLGGLNEIGKNITVIEYKDEIAIIDCGLKFPDEEMYGIDIVIPDVTYLV
KNIEKVKGIFLTHGHEDHIGALPYVLKQLNVPVYGTKLTLGIVETKLKEHGLLSIVKLVC
VKPKDIIKLDTMSVEFIRTSHSIADSTAIAIHTPLGVIFHTGDFKIDYTPIDGCVADFAR
FAELGKRGVLLMLADSTNVERSGYTMSESTVGETFQKIFAKATGRIIVATFASNIHRIQQ
VVEAAEKFDRKVAVSGRSMENILAVAIEYGYLTAKEGTMISIDAINRYPADKVAIITTGS
QGEPMSALTRMAASEHKKVNIVDGDMVIISASPIPGNEKLVSRVINQLFKKGADVIYEAL
ADVHVSGHACQEELKLIHTLVKPKFFMPVHGEYRHLKQHGELAARLGMEKKNILIADNGD
VIELTRSSIRKNGSVISGQVFVDGLGVGDVGNIVLRDRKHLSQDGILTVVVTIEKQSGSV
IAGPDIISRGFVYVRESEDLMDEAREIVKNALKECEENHITEWATIKSNIKDGLRLFLYE
KTKRKPMILPIIMEI
NT seq
1668 nt
NT seq
+upstream
nt +downstream
nt
atgcgtaaagaaagagacaaaataaaaattatgccattaggtggtttaaatgagattggg
aaaaacataacagttatagaatataaagatgaaatagcaataattgactgtggattgaaa
tttccagatgaagaaatgtatggaatagatatagtcattccagatgtgacctatttagtt
aaaaatattgaaaaagttaaggggatatttttaacgcatggacatgaagatcatattgga
gcacttccctatgttttgaaacaattaaatgttcctgtgtatggaacaaaactcacctta
ggtatagttgaaacaaaactaaaggagcacggtcttttaagcattgttaagcttgtatgt
gttaagccaaaagatattataaaacttgataccatgtcagttgagtttataagaacaagt
catagtatagcggattcaactgctatagctattcatactccacttggtgtgattttccat
accggtgattttaaaatagactatactccaattgatggatgtgttgcggatttcgctaga
tttgctgaattaggtaagaggggagtcttacttatgctagctgacagtactaatgttgaa
agatcaggatacactatgtctgaaagtacagttggagaaacatttcaaaagatatttgct
aaagctactggaagaataatagttgctacttttgcatctaatatacacagaattcaacaa
gtggtggaggcagcagaaaaatttgatagaaaagtagctgtatcaggcaggagtatggaa
aatattttagcggttgccattgaatatggatatctaacagctaaagagggaacaatgatc
agtatagatgctataaataggtatcccgctgacaaagttgcgataataacaaccggaagt
cagggagagcctatgtctgcacttacaagaatggcagcttctgaacacaagaaagtaaat
attgttgatggtgatatggttattatttcagcatcaccaataccaggaaacgaaaaatta
gtttctagagtaataaatcagttatttaaaaaaggtgcagatgttatatatgaagcatta
gcagatgtacatgtatctggtcatgcttgccaggaagaattaaagttaattcatacttta
gttaaaccaaagtttttcatgccagttcatggagagtatagacatttaaaacagcatggt
gagcttgcagcaaggcttggtatggaaaagaaaaatatacttatagctgacaatggagat
gtaattgagcttacaagaagttctataagaaaaaatggcagtgtaatttcaggtcaagta
tttgtagatggactaggtgttggagatgtgggaaatattgttttaagagacagaaaacat
ctatcacaggatggaattctcactgtggttgttactattgaaaaacaaagtggcagtgtt
attgctggaccagatattatttctagaggttttgtatatgtgagagaatcagaagatctt
atggatgaagcaagagaaattgttaaaaatgctctaaaggaatgtgaagaaaatcatata
actgaatgggctacaataaaatccaatataaaagatggtttaaggttattcttatatgaa
aaaactaaaagaaagcctatgatactacctataattatggaaatataa
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