Clostridium pasteurianum BC1: Clopa_3678
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Entry
Clopa_3678 CDS
T02645
Name
(GenBank) ATPase involved in DNA repair
KO
K03546
DNA repair protein SbcC/Rad50
Organism
cpas
Clostridium pasteurianum BC1
Brite
KEGG Orthology (KO) [BR:
cpas00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cpas03400
]
Clopa_3678
DNA repair and recombination proteins [BR:
cpas03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
Clopa_3678
Archaeal homologous recombinant proteins
Clopa_3678
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SbcC_Walker_B
AAA_23
AAA_29
AAA_27
Fez1
SMC_N
ABC_tran
Prim_Zn_Ribbon
Motif
Other DBs
NCBI-ProteinID:
AGK98458
UniProt:
R4K7B1
LinkDB
All DBs
Position
complement(3691577..3695071)
Genome browser
AA seq
1164 aa
AA seq
DB search
MRPIKLKIKGLNSFIDSQDVNFEKLTDKGLFGIFGPTGSGKSTILDGITLALYGEVARKS
SNYMNTNCDTLNVSFQFQISSKEIKRYRVDREFKRDHKTGSIRSKSAKIIDITEENEIIL
EEGAKTVTGKCEEIIGLKLEDFTRTVVLPQGKFSEFLKLEGKDRRNMLERLFNLQKYGDN
LSIKLNNNTKEEKEKASILEGELKGYEDISDKILEEKTKDLSVKKEQCDKCEIELKSSEE
ALNKGKELWDIQNELKEQLHRENKLKEKAGEIDESQRKVALGESALKVKPYIDNYENALV
QIKAVDSELVNLKNKVEAIKENKAKLESLLETAKNKKDKELPLLNVKEQKVADAIEEKNI
LDAIKQEKNLLEKKIINTEENLRNTNDRIEKNEVDINEGNTNITIKEDRVETLKISEEYK
EKVNEGIVILNSYRNLVKQKNNLSVNIKTTLANAEKAQNKSEKLLKELEHREKILISYNE
ELKQLVEACPGDQNTLLILQEKLSSLRDKWNKFREYSAYISKSKETIEKFKEELNSKKEE
KVFLEKEINEINNSIKKLETENLAHILRESLLEGEPCPVCGSKDHHKAGIKILDSSNLGQ
LKIDLSSGEEKYKLLTEGTIKLETTIKGEERNIKERELKISELGEDFKAASVDILENEFD
RLKDNINIFNTKKTDLDKKIKALSEEKSTLSIEYGKENTRLIENRGQSGKLQEDLKLIDG
ELQKTNEKLSALKLELAIEDFENKSQEIFRKEKEKAALEKEIKVLRDSLKDKLLQKEAFS
KALGILREDLRGKKTTLIEKDKNIEEKEKSIKNKVGAVEDLHSLMEEIAQYIKEIKEGYE
RAEKAKNEIEIQYNQCNSDIISTQSKLSSLKERSINDGAELESALLEEGIENIDEAKNNF
IIKEEINKLKLEIEKYKDSLAKLTGTIESLKEKMNNRSLTEEQWIEIQNVKNEKAQILKD
LEENKIKLETEVKAIGERLEEKKKLLKNKEKLDYKLGLLDDLDKLFKGKKFVEFVAANQL
KYVSIEACKRLKEITGGNYGLEVDENGKFLIRDYKNGGAQRDVSTLSGGETFVTSLALAL
ALSAQIQLKGTAPLELFFLDEGFGTLDDNLLEVVMDSLEKIHNDKLSIGIISHVESIKNR
VPVKLIVTAAEAGMGGSKVRIERS
NT seq
3495 nt
NT seq
+upstream
nt +downstream
nt
atgagaccaattaaacttaaaataaaaggtttaaatagttttatagatagtcaggatgtg
aactttgaaaaattaactgataaaggactatttggtatatttggtcctactggaagtggt
aaatctacaatactggatggtattactttggcattatatggagaagtggcaagaaaaagt
tcaaactacatgaatacaaattgtgatactttgaatgtaagttttcagtttcagatctca
tcaaaagaaataaaaagatatagagtagatagggaatttaagcgagatcataaaacagga
agtataaggagtaagtcagctaaaataatagatataactgaggaaaatgaaataattttg
gaagaaggcgctaagactgtaaccggaaaatgcgaagagataattggactaaaactagag
gattttacaaggactgtagttttgcctcagggaaagtttagtgaatttctaaaattagag
ggaaaagatagaagaaacatgttggaaagattatttaaccttcaaaaatacggagataat
ctatcgattaagttgaacaataacactaaggaagaaaaggagaaagcaagcatccttgaa
ggtgagctaaagggatatgaagatattagtgataaaattctggaagaaaagacaaaggat
ttatcagtaaaaaaagaacaatgtgataaatgtgaaatagaattaaaaagttctgaagag
gctcttaataaaggcaaagaattatgggatattcaaaatgaattaaaagagcaattacat
agagaaaataaacttaaagaaaaggcaggggaaatagatgaaagccaaagaaaggttgcc
ttaggagaaagtgctttaaaggttaagccttatattgataattatgaaaatgctttagtt
caaataaaggctgtagacagcgaactggtgaatttaaaaaataaagtggaagctataaag
gagaataaagcaaagctggagtctttattagaaacagctaaaaataaaaaagataaggaa
ctgcctttattgaatgtaaaagagcagaaagttgcagatgcaatagaggaaaagaacata
ttagatgccataaaacaggaaaaaaatttattggaaaagaaaattatcaatacagaggaa
aatctgcgaaatacaaatgacaggatagaaaaaaatgaagtagacattaatgagggtaat
actaatattactattaaagaggatagggtagaaactttaaaaatttctgaagaatataag
gaaaaggttaatgaaggcatagtaattttaaatagttataggaatttagtaaaacaaaaa
aataatttatctgtgaatataaaaactacattggcaaatgctgagaaagctcaaaataaa
agtgaaaagttattaaaagaacttgaacatagagaaaagatattgattagttataatgaa
gaattaaagcagctagtagaagcttgccccggggatcagaatacgctattaattcttcag
gaaaagctatcctctttaagagataagtggaataagtttagggaatatagtgcttatata
agtaaaagtaaagaaactattgaaaaatttaaagaagagttaaatagtaaaaaggaagaa
aaagtatttttagaaaaagaaattaacgaaataaataatagtataaagaagcttgaaact
gaaaatttggcacatatattaagagaatcattactagaaggtgagccatgtcctgtatgc
ggttcaaaggatcatcataaagctggaattaaaattttggattcaagtaatttaggacag
ttaaaaatagatttaagtagtggagaagagaaatataagctgttaactgaagggaccata
aagctggaaactactattaaaggtgaagagagaaatataaaggaaagggaacttaaaatt
agtgaattaggtgaggatttcaaggcggcttctgtggatatacttgaaaatgaatttgat
agattaaaagataacataaatatatttaatactaaaaagactgatttagataagaaaatt
aaagctttaagtgaggaaaaaagtaccctaagtattgaatatggtaaagaaaatacaaga
ttaattgaaaatagagggcaatcaggaaaactacaagaggatttaaagctaatagatgga
gaattacaaaagacaaatgaaaaattatcagcattaaaacttgaattagccattgaagat
tttgagaataagagccaggagatttttcgaaaagaaaaggaaaaggctgctttagaaaag
gagataaaagttttaagggacagtttaaaggataaattattgcaaaaagaggccttcagt
aaggctttaggaattttaagagaggacttaagaggtaagaaaactactcttattgaaaaa
gataaaaatatagaagaaaaagaaaaatctataaaaaataaagttggagctgtagaagat
ttacattcgcttatggaagaaatagctcagtatataaaagagataaaagaaggatatgaa
agagcagaaaaggctaaaaatgaaatagaaatacagtacaatcaatgtaatagtgatata
atttctactcaaagtaagttatcaagcttaaaagaaagaagtataaatgacggggcagag
cttgaaagtgccttgcttgaagaaggtattgagaatatagatgaagctaaaaataacttt
ataattaaagaagaaattaataaattaaagctggaaatagaaaagtataaggactccctt
gctaaacttactggtaccatagaaagtcttaaagagaaaatgaataatagaagtctaacg
gaagaacaatggattgaaatacaaaatgtgaagaacgagaaagcccaaatattaaaagat
ttagaggaaaataaaataaaattagaaacagaagttaaagccataggtgaaagattagaa
gagaaaaagaagcttttaaaaaataaagagaaattagactataaattaggtcttttagat
gacctggataaactattcaaggggaaaaagtttgtggaatttgtggcggcaaatcagcta
aaatatgtatctattgaagcttgtaagcgcctaaaggagattacagggggaaactacggc
ttagaagttgatgaaaatggtaaattcctcattagagattataaaaatggaggtgcacaa
agggatgtatccactttatcaggtggagaaacctttgttacatctttagctttagcattg
gcattatctgctcaaatacaattaaagggcacagctcctttagaattatttttcttagat
gaaggctttggaactcttgatgataatttgctggaagtagtaatggattccctagagaaa
attcataatgataaattatccataggcataataagtcatgttgaatcaataaagaataga
gtaccggtaaaacttatagtaacagctgcagaagctggaatgggtggtagtaaggttagg
atagagagaagttag
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