Clostridium pasteurianum DSM 525 = ATCC 6013: CLPA_c02610
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Entry
CLPA_c02610 CDS
T03753
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
cpat
Clostridium pasteurianum DSM 525 = ATCC 6013
Pathway
cpat03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cpat00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CLPA_c02610 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cpat03021
]
CLPA_c02610 (rho)
03019 Messenger RNA biogenesis [BR:
cpat03019
]
CLPA_c02610 (rho)
Transcription machinery [BR:
cpat03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
CLPA_c02610 (rho)
Messenger RNA biogenesis [BR:
cpat03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
CLPA_c02610 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
S1CSD-TOTE-2
Spore_III_AA
NACHT
SpoU_sub_bind
AAA_25
AAA_22
AAA
ABC_tran
Peptidase_C6
Motif
Other DBs
NCBI-ProteinID:
AJA50349
UniProt:
A0A0H3IXZ1
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All DBs
Position
276061..277773
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AA seq
570 aa
AA seq
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MFSVDLESKTLVQLREMAKGLGIKNISKFKKKDLIEEIKKVSPVSIEKDGVVLSEKISPK
KGKNVASDIDENNSENLKNENDVIVNDKEILNKNILKKDETKIKAEKTQVSISNTKSSKN
SAEEIQKGNTEVVRENHRTETNIKLEHDRNRAEFDKNHERKDSHNFKSNFDQTRNANDKD
KHIREEKDDKFKEMVHESNSAKGVLELVDNNNFGFLRGKNYLTSPDDIYVSPSQIRRFNL
KTGDEVEGKVRIPKEGEKFKALLYVQSVNGENPDKAVGRKPFETLVPVYPNKRLKLEKNE
KELATRLMDIMSPIGKGQRGLIVAPPKAGKTTLLKTVAQSISHNHPEVKLIVLLIDERPE
EVTDMKESIKGEVIYSTFDEEPEHHTKVAYMVLERTKRMVEQGQDVVILLDSLTRLSRAY
NLTITPTGRTLSGGLDPGALIMPKKFFGAARNIKEGGSLTILATALVDTGSRMDDMIFEE
FKGTGNMEVHLDRRLQERRIFPAIDIYKSGTRKEKLLLSQEEYDASYLIRRVLYNENSTQ
SVTEKVINLLSETKNNKEFVDIISKEKWER
NT seq
1713 nt
NT seq
+upstream
nt +downstream
nt
ttgtttagtgttgacttagaaagtaagacgcttgtacagcttagagaaatggcaaaaggg
ctaggaataaaaaatatttcaaaatttaaaaagaaagatcttattgaagaaattaaaaaa
gtttctcctgtttctatagaaaaagatggagttgtgcttagtgagaaaatatctcctaaa
aaaggtaaaaatgtagcttcggatatagatgagaataatagtgaaaatttaaaaaatgaa
aatgatgtaatcgttaatgataaagagatattaaataaaaatatattaaaaaaagatgaa
acaaaaataaaagcagaaaagactcaagttagcatcagtaatactaaaagttcaaaaaat
agtgcggaagagattcaaaagggaaatactgaggttgttagggaaaaccataggacagaa
accaatattaaattggaacatgataggaatagagctgaatttgataaaaatcatgaaaga
aaagactcacataattttaaaagtaattttgatcaaacaagaaatgccaatgacaaagac
aaacatattagagaagaaaaagatgataaatttaaagaaatggtacatgaatctaattct
gctaaaggagttttagaattagtagataataataattttggatttttacgtggtaagaat
tatttaactagtccagacgatatatatgtatctccatctcagataagaagatttaatctg
aaaacaggagatgaggtagaaggtaaagttagaatacctaaagaaggagaaaaatttaaa
gcacttttatatgtacaaagtgtaaatggtgaaaatccagacaaggcagtaggaagaaaa
ccctttgaaaccttagtaccagtttatccaaataaaagattgaagttggaaaaaaatgaa
aaagagttggcaaccagacttatggatattatgtcacctattggtaagggacaaagagga
cttatagttgcccctcctaaagcaggaaaaactaccttactaaagacagtagcccaaagc
atatctcataatcatccagaagttaaactcatagtgcttttaatagatgaaagaccggaa
gaagttactgatatgaaggaatctataaagggagaagttatatattctacctttgatgag
gagccagaacatcacacaaaagttgcatatatggttttggaacgtactaagagaatggtt
gaacagggacaggatgtggtaatacttttagatagtttaaccagactttcaagagcatac
aatcttactataacacctacgggaagaactttatctggagggcttgatccaggggcttta
ataatgcctaagaaattctttggagctgctaggaacataaaagaaggaggaagccttact
atactggctacagctcttgtggatacaggaagcagaatggatgatatgatttttgaagaa
tttaaaggtacaggaaacatggaagtacatcttgatagaagactccaagaaagaagaatt
ttccctgcaattgacatttataaatctggaacgagaaaagaaaagcttcttttatcacag
gaagaatatgatgcatcatatttaataagaagagtattgtataatgaaaatagtactcaa
agtgtaactgaaaaggtaataaatctcttgagtgaaactaaaaacaataaagaatttgta
gatatcataagtaaagaaaaatgggaaagataa
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