Clostridium pasteurianum DSM 525 = ATCC 6013: CLPA_c08720
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Entry
CLPA_c08720 CDS
T03753
Symbol
helD1
Name
(GenBank) helicase IV
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
cpat
Clostridium pasteurianum DSM 525 = ATCC 6013
Pathway
cpat03420
Nucleotide excision repair
cpat03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cpat00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CLPA_c08720 (helD1)
03430 Mismatch repair
CLPA_c08720 (helD1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cpat03400
]
CLPA_c08720 (helD1)
Enzymes [BR:
cpat01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CLPA_c08720 (helD1)
DNA repair and recombination proteins [BR:
cpat03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CLPA_c08720 (helD1)
MMR (mismatch excision repair)
Other MMR factors
CLPA_c08720 (helD1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
AAA_19
UvrD_C
PhoH
DEAD
Viral_helicase1
UvrD_C_2
SLFN-g3_helicase
AAA_11
ResIII
AAA_30
T2SSE
AAA_16
NACHT
GapR_DNA-bd
Motif
Other DBs
NCBI-ProteinID:
AJA50960
UniProt:
A0A0H3J2F7
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All DBs
Position
complement(955181..957418)
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AA seq
745 aa
AA seq
DB search
MNNIELKLENEWLQQVLKEIEKQLNEKSNFKKKFRDDAIETQRQLWNDIGSVSITNGLDQ
IVDFIQFINTMKTQKRTHEFTRKLEEKYKKMLLSPYFGRIDFLESGDEKSEKYYIGISNL
INDNYDFMVYDWRSPVSSMFYDYEIGDAGYECPEGIINGKVTLKRQYKIYKDKIEYMFDS
NLKIDDEILQNILSKNTDSKMKAIATTIQREQNKVIRNEEYKNLIVQGPAGSGKTSVALH
RIAYLLYKHRDKITPENIIIFSPNEIFNDYISNVLPELGEDTMYQTTFNEYMNNSLCNNL
IKETYCQMMEYILASKKHDYYETRINSIKFKSSLEFINILKQYVVYLEKKNRNFTDIILR
DHLIISSNDIQELFFKDYSQLPLKRRLHKIKERILFLLEPYKKRMIAEVANELRNSGDYV
DKIEIMELSKTSIDNEMKSVYHEIDKITAFDLLSAYKKLFENLEFFLRKSNTDYDEKIID
DIKIYTLQNIKAEKLNYEDQPPLLYLKGVLEGLPKTLEIKYVIIDEAQDYTPLQYEIFHQ
LFNSANITMLGDLNQSINPFMNVGNYNNISNIFPKDNTCIINLTKSYRSTMEITKFSRKL
LNKNITDEYIERSGNKPSVLGFSNEEAIKERLIDDVKIYKEKGYKSIGIITRTVKEAQEV
YRFLKDKIEIKIITKDDDAYVSDSLIIPAYLAKGLEFDVALIYNAGNENYNCEEERLLLY
TACTRALHVLCIYYSGQITPLLAEK
NT seq
2238 nt
NT seq
+upstream
nt +downstream
nt
atgaataacattgaattgaaattggaaaatgaatggttacaacaggttctcaaagaaatt
gaaaaacagcttaatgaaaaaagtaattttaagaaaaagtttagagatgatgccattgaa
acccaaagacaattatggaatgatataggttctgtttctataacaaatggactggatcaa
attgtagattttatacaattcattaatactatgaaaacacaaaaaagaacccatgaattt
accagaaaacttgaagaaaaatataagaaaatgcttttatcaccctattttggcagaatt
gattttcttgaaagtggtgatgaaaaatcagaaaaatattatattggcatttccaatctc
attaatgataactacgatttcatggtatatgactggagatcacctgtctccagcatgttt
tatgactatgaaattggagacgctggctatgaatgtcccgaaggaatcattaacggaaaa
gttacactaaaaagacaatacaaaatttataaagataaaattgaatatatgtttgatagt
aatcttaaaatagatgatgaaatacttcaaaatatactgagtaaaaatactgatagtaag
atgaaagctatagcaaccaccattcaaagagaacaaaataaagtaattcgtaatgaagag
tacaaaaatttaattgttcagggtcctgctggaagcggaaaaacttctgtggctcttcat
agaattgcctatttattatataagcatcgtgataagataacacctgaaaacataataata
ttctctccaaatgaaatttttaacgattatatctctaatgtattacctgaactaggagaa
gatactatgtaccagacaacctttaatgaatatatgaataacagcttatgcaataacctt
ataaaagaaacttattgccagatgatggagtatattcttgcatctaaaaagcatgattat
tatgaaaccaggataaacagtataaagtttaaatcttccttagaatttataaacatatta
aagcaatatgtagtttatcttgaaaaaaagaacaggaactttacagatataattctaaga
gatcatttaataatctcttctaatgatatacaggagttattttttaaagattattcccaa
cttccactaaaaaggaggctgcataagataaaagaaagaattttattcctcttagagcct
tacaaaaaacgtatgatagcggaagtggctaatgaactcagaaattcaggtgactatgta
gataaaattgaaattatggaattaagcaagacctctatagacaatgaaatgaaaagtgta
taccatgaaattgataaaatcacagcgtttgatttgctaagtgcttataaaaagcttttt
gagaaccttgagtttttcctaaggaaatcaaatactgactatgatgaaaagatcattgat
gatataaaaatctatactttacaaaatatcaaagcagaaaaacttaactacgaagaccag
cccccgcttttatatctaaaaggtgtacttgagggacttccaaaaactttagaaataaaa
tatgttattattgatgaggcacaagattatacaccgcttcagtatgaaatctttcatcag
ctttttaattctgccaatataaccatgctcggtgatttgaatcaatctattaacccattt
atgaatgtaggaaattacaacaatatatctaatatattccctaaggataatacctgtata
ataaatttaactaaaagctatagatccactatggaaatcaccaagttttcaagaaaactt
ctcaataaaaacattactgatgaatatatagaaagaagtggaaataaaccttcagtactt
ggcttttcaaatgaagaagctataaaagaaagacttattgatgatgtaaaaatatataag
gaaaaaggctataaatctataggcattataacaagaactgtaaaggaagcgcaggaagta
tacagattcttaaaagataaaattgaaattaaaataataaccaaagatgatgatgcatac
gtaagtgatagtttgataataccagcttatcttgctaaaggattagaatttgatgtagca
cttatatataatgcaggaaatgaaaattataattgtgaagaagaacgtcttctgctttac
actgcttgcaccagagcacttcatgttctatgcatatactactcaggccaaattacaccc
ttattagcagaaaagtaa
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