Entry |
|
Symbol |
cshA1
|
Name |
(GenBank) DEAD-box ATP-dependent RNA helicase CshA
|
KO |
|
Organism |
cpat Clostridium pasteurianum DSM 525 = ATCC 6013
|
Pathway |
|
Brite |
KEGG Orthology (KO) [BR:cpat00001]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CLPA_c16360 (cshA1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:cpat03019]
CLPA_c16360 (cshA1)
03009 Ribosome biogenesis [BR:cpat03009]
CLPA_c16360 (cshA1)
Enzymes [BR:cpat01000]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CLPA_c16360 (cshA1)
Messenger RNA biogenesis [BR:cpat03019]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CLPA_c16360 (cshA1)
Ribosome biogenesis [BR:cpat03009]
Prokaryotic type
rRNA helicases
CLPA_c16360 (cshA1)
|
SSDB |
|
Motif |
|
Other DBs |
|
LinkDB |
|
Position |
complement(1748772..1750340)
|
AA seq |
522 aa
MKNIKFTELELKDTVLKAIDDMGFENPSEIQSASIPVIMEGFDIIGQAQTGTGKTCAFGA
PIISKIDTSKRFIQALILTPTRELAIQIYEELRRLSKYDKVRSLPVYGGQSMDRQISSIK
KDVSIIVGTPGRVLDHIRRKTLKLNNLNYLVLDEADEMLNMGFIDDIEEIIKNTNSERQT
LLFSATMPKPIKKLSENYLKKDVKHIQILKKSLTVSKIDQYYYEVHNNTRLESLCRILDI
SEPESAIIFCRTKKSVDELVSTMSSKGYNIEGMHGDMKQKNRLSTLNKFKNGNLTFLAAT
DVAARGIDVENITHVINYELPQDTESYVHRIGRTGRANRSGTAISLITRKDFTKLKQIEK
DIKSKITKQKIPTMQEIINIKSKNIVSKVSNILSTEEYKKFEPIIENLGKEYSLNQIAAA
LLKNALDKEISTEYNDDLFNQENSVRLFMSIGRRDGINIKSLLEFIDTTSTVNSNYIGSI
DILDKFSFVDVNEKKVSLVIKNTDGKKFNNRRVNIEVAKNKN |
NT seq |
1569 nt +upstreamnt +downstreamnt
atgaaaaacattaaatttactgaacttgaattgaaggatacggttttaaaagccatagat
gatatgggatttgaaaatccttctgaaatacaaagtgcaagtattcctgttataatggaa
ggctttgatattatcggtcaagcacaaacaggtactggaaaaacctgtgctttcggtgct
cctattattagtaaaatagacacctcaaaacgctttattcaagcattaatattaactcct
acaagagaacttgcaattcaaatatatgaagaattaagaagactttctaaatacgacaag
gttcgttcattaccagtctatggaggtcaatctatggatagacaaatatccagtataaaa
aaagatgtttccataatagttggtacccctggaagggttctagatcatataagacgaaaa
acattaaaactgaataatcttaactatttagtactagatgaagcagatgaaatgctcaat
atgggatttattgatgatattgaagaaatcataaaaaatactaatagcgaaagacaaact
ttgctgttttctgcaactatgccaaaaccaataaaaaaactatctgaaaactatctaaaa
aaagatgtgaaacatattcaaatattaaaaaaatctttaacagtatcaaaaatagatcaa
tattattatgaagtccataataatacaagacttgagtctctatgcagaattttagatata
tcagaaccggaaagtgctattatcttttgcagaacaaaaaaaagtgttgatgaattagta
agtaccatgagttccaaaggatacaatatagagggaatgcatggtgatatgaaacaaaag
aatagactttctactttaaataaatttaaaaatggcaatttaacctttcttgccgcaacg
gatgtagctgcaaggggaattgatgtagagaatataacccatgtaattaactatgaactt
ccacaggatactgaatcctatgttcacagaatcggaagaactggaagagctaatagatct
ggtacagcaataagccttataactagaaaagattttacaaaactaaagcagatagaaaaa
gatataaagagcaaaattactaaacaaaagatacctactatgcaggaaataataaacatt
aagtcaaaaaatattgtaagtaaagtttcaaatattcttagtacagaagaatacaaaaaa
ttcgaaccaattatagaaaacttaggtaaagaatattcattaaatcaaattgcagcagct
ctattgaagaatgcacttgataaagaaatatccacagaatacaatgatgatttatttaat
caagaaaattcagtgagattatttatgtctataggtcgtagagatggaataaatataaaa
tcacttttagaatttatagatactacttccactgtcaattcaaattatataggaagtatt
gatatattggataaattttcttttgtagatgtaaatgaaaagaaagtatcattagtaatt
aaaaatactgatggcaaaaaatttaataatagaagagttaatattgaagtagctaaaaat
aaaaattag |