Clostridium pasteurianum DSM 525 = ATCC 6013: CLPA_c20100
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Entry
CLPA_c20100 CDS
T03753
Symbol
recQ
Name
(GenBank) putative ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
cpat
Clostridium pasteurianum DSM 525 = ATCC 6013
Pathway
cpat03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cpat00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CLPA_c20100 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpat03019
]
CLPA_c20100 (recQ)
03400 DNA repair and recombination proteins [BR:
cpat03400
]
CLPA_c20100 (recQ)
Enzymes [BR:
cpat01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CLPA_c20100 (recQ)
Messenger RNA biogenesis [BR:
cpat03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CLPA_c20100 (recQ)
DNA repair and recombination proteins [BR:
cpat03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
CLPA_c20100 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
HTH_40
RecQ_Zn_bind
ResIII
Motif
Other DBs
NCBI-ProteinID:
AJA52068
UniProt:
A0A0H3J9Y2
LinkDB
All DBs
Position
complement(2148025..2150193)
Genome browser
AA seq
722 aa
AA seq
DB search
MINEALNTLQKYYGYKEFRKSQSDIIDSILCKKDTLAIMPTGGGKSICYQIPALLFNGIT
IVISPLISLMKDQVDNIKDLGINAEYINSSLTVKETHSIIEKLNNNEIKILYLAPERLES
IDFCNLIRTLNISQIAVDEAHCVSQWGHDFRTSYRYISKFIKSLSKPPVVTAFTATATRE
VQNDIIKLIELNNPEVFISGFDRENLKINVLKIPGRLKYVLDYVNKNKDQSGIIYASTRK
EVDNIYENLVESSVSVSKYHAGLSDAERKQNQEDFVYDRVGVMVATNAFGMGIDKSNVRF
VIHYNMPKNIESYYQEIGRAGRDGEKSECILLFSPQDIMTQKYLIELGTQNPERRINDYK
KLQNMIDFVHHNGCLRKYILNYFGEETPYDNCNNCSSCLTEGEMVDKTLEAQKVLSCIYR
MRRDFGVNTIVDVLRGSSQKKILQYRFNELSTYGLMKNYSKKNLAEFINTLISHGFINLK
EGEYPTVVLSNKSMDVLKGHEKVVFKESIEAKKISEDNELFEILRNLRKEIAVKEGIPPY
YIFSDNTLKEMSLRYPLDKDHILDISGVGQVKYEKYGETFLNIINEYVNKNNIEVNWTEK
IENKISHATKAVNKKEKTHEITIDMIKSGNSIKDIASQRNLTIGTILTHIDKYFREGNAE
KLNINFDGIFTEEQEKSIISAVDKLGVERLAPIKAEVSDEISYDAIKAVILKNYLTNRNN
LQ
NT seq
2169 nt
NT seq
+upstream
nt +downstream
nt
ttgataaatgaagcattaaatacattacaaaaatattatggatacaaagaattcagaaaa
tcacaaagtgatataattgatagtatattatgcaaaaaagatactttagctattatgcct
acaggaggaggtaaatctatctgttatcagataccagcattattgtttaatggtattact
attgtgatttctccattaatatctcttatgaaggatcaagtagacaatataaaagatttg
ggtataaatgctgaatatataaatagctctttaactgttaaagaaactcattcaattatt
gaaaaattaaataataatgaaataaaaatactctatttagcaccagaaagattagaatca
atagatttctgtaatcttataagaacattaaatatatctcaaatagctgtagatgaagct
cactgtgtatcccagtggggacatgattttagaacaagttacagatacataagtaaattt
ataaaaagtctttcaaaacctcctgtagtaactgcttttactgctacggctacaagggaa
gtacaaaatgatataataaaacttatagaactcaataatccagaagtttttatatcggga
tttgatagagaaaatttaaaaataaatgtattaaaaataccaggaagattaaagtatgta
ttagattatgtaaataaaaataaagatcaatctggaataatatatgcatctactagaaaa
gaagtagataatatttatgaaaatcttgttgaaagtagtgtgtctgtttcaaaatatcat
gcaggtttatcagatgctgaaagaaaacaaaatcaagaagattttgtatatgatagagta
ggagttatggtagctactaatgcctttggtatgggaattgataaatcaaatgtacgtttt
gtaatccattataatatgcctaaaaatattgaaagctattatcaggagataggaagagca
ggtcgtgacggcgaaaaaagtgaatgtattttattattttcacctcaggacattatgacg
caaaaatatttaattgaattgggaactcagaatcctgagagaagaataaatgattataaa
aagcttcagaatatgattgattttgtacatcacaatggatgccttagaaaatatatatta
aattattttggagaagaaactccctatgacaattgcaataattgcagcagttgtttaacg
gagggagaaatggtagataaaactttggaagcacaaaaggtgctatcctgtatatataga
atgagaagagatttcggagtaaatacaattgtagatgtactaaggggttcttctcaaaag
aaaatattacagtatagatttaatgaactgtcaacctatggattaatgaaaaattattct
aaaaagaatttagcagaattcataaatactcttatatctcatgggtttataaacttaaaa
gaaggagaatatcctacagttgtacttagtaataaatctatggatgttttaaaaggtcat
gaaaaagtagtttttaaggaatccattgaggctaaaaaaatatctgaagataatgaacta
tttgaaatcttgagaaatctacgtaaagaaatagctgtaaaagagggtattcctccctac
tatattttctctgataatacgttaaaggaaatgagtttaagatatcctctagataaagac
catatacttgatatatcgggagtgggccaggttaaatatgaaaaatatggagaaactttt
ttaaatataataaatgaatatgtaaacaaaaataatattgaagtaaattggactgaaaaa
atagaaaacaagatatcccatgcaactaaagcagtaaataaaaaagaaaaaactcatgaa
ataactattgatatgataaaatctggtaatagtataaaggatattgccagccaaagaaat
cttactataggtactatacttacacatatagataaatattttagagagggcaatgcagaa
aaacttaacattaattttgatggtatttttacagaagaacaggaaaaaagcattatttca
gctgttgacaaattaggagtagaaagacttgcaccaataaaagctgaagtatctgatgaa
ataagttatgatgctataaaagctgtaatattaaaaaattatttaacaaatagaaacaat
ttacaatga
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