Clostridium pasteurianum DSM 525 = ATCC 6013: CLPA_c26300
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Entry
CLPA_c26300 CDS
T03753
Symbol
helD3
Name
(GenBank) helicase IV
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
cpat
Clostridium pasteurianum DSM 525 = ATCC 6013
Pathway
cpat03420
Nucleotide excision repair
cpat03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cpat00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CLPA_c26300 (helD3)
03430 Mismatch repair
CLPA_c26300 (helD3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cpat03400
]
CLPA_c26300 (helD3)
Enzymes [BR:
cpat01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CLPA_c26300 (helD3)
DNA repair and recombination proteins [BR:
cpat03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CLPA_c26300 (helD3)
MMR (mismatch excision repair)
Other MMR factors
CLPA_c26300 (helD3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
AAA_19
SLFN-g3_helicase
DEAD
ResIII
PhoH
AAA_11
UvrD_C_2
AAA_30
NACHT
Motif
Other DBs
NCBI-ProteinID:
AJA52685
UniProt:
A0A0H3J693
LinkDB
All DBs
Position
complement(2805216..2807507)
Genome browser
AA seq
763 aa
AA seq
DB search
MTIDKKEFEFEKDRLNSTKKWIDNEINIINKNDLDLQNKISELRKQAKGRYNEELETTQK
LYNITHKNLEKYTEAKDQPYFARIDFREKYRDNESYYIGKFGLGDSKTGDEIVIDWRSPI
ADLYYSGTQGETSYEIPDGFVDGTLNLKRKFLIRDSKLKDAFDEGINEIILKSKGEDNVL
VDEFLKINLEESVSSKLKDVVATIQKEQNDIIRASKNSPLIVQGSAGSGKTTIALHRLAY
LLYKYSKTISGNNILVIAPNKLFLDYISMVLPSLGIDKVRQKTFEEQAVEILQLKGKILT
KDKKLTGLLEEEDKNNKLMLESSSLKGSILYKSIMDDYISYIETKDSEIEDIKVDKYVLF
YSEDIKRLFIKDMKHLPIDKRKDEIKRYFMIKFNDRILEIMEKVVFKYEYNIARIKKLME
DGPERRKKIIELYDERDTSKKYILKSAKHNIEEYFENWKHKDTKELIYKLFNDENIFDNV
VKNNISKELSQYIKDELNHSLEKGIVDSDDLSSMIYLKFRIEGVEEKFRFKHIVIDEAQD
YSPFQYYIIKDMAKNNSYTIVGDIGQGIYYYKGVNDWEKFIKEVFNNEGNYVQLTQSYRS
TVEIIDFANKVLIKQKNSLKPAKPVLRHGAKPEIKEFQNNKDFACNLDEIVNHCEKIGKS
NVAVIGKTYEECKKIKGFLKKYSNYNWNIIKDTDKNVNLEKIIIPSYMTKGLEFDCSVIY
NCDEGNYNDSEFDKKILYVVLTRALHLEYIFYNKKLSSLLSDV
NT seq
2292 nt
NT seq
+upstream
nt +downstream
nt
ttgactatagataaaaaggaatttgaatttgaaaaagatagattgaattctacaaaaaaa
tggatagacaatgaaataaatataataaataaaaatgacctggatcttcaaaataaaata
agtgaacttagaaaacaagctaaaggcagatacaacgaagaactggaaacaactcaaaag
ctatataatataactcataaaaacttagagaaatacacagaggcaaaagatcagccctat
tttgcacgaatagatttcagagagaaatacagagataatgaaagctattatataggtaaa
tttgggcttggagatagtaagacaggtgatgaaattgtaattgactggaggtctcccata
gcagatttgtattatagtggaactcagggggaaacttcttatgaaataccagatggtttt
gtagatggaaccttaaatttaaagagaaaatttttaattagagattcaaaacttaaagac
gcatttgatgaaggtataaatgaaattatattaaaatcaaaaggtgaggataatgtttta
gtagacgagttcttaaagataaatcttgaagaaagtgtaagcagtaaacttaaagatgta
gtagctactatacaaaaagagcaaaatgatattataagagctagtaaaaactctcctctt
atagttcaaggctcagcaggttctggaaaaaccaccattgcactacataggcttgcatat
cttttatataaatatagtaaaactatatcaggaaacaatattttagttattgcacctaat
aaattatttttagattatatatcaatggtactgccaagtcttggtattgataaagtaaga
caaaaaacctttgaagaacaggctgtagaaattcttcagttaaagggcaagatacttaca
aaagataaaaagctgactggcttattagaggaagaagataaaaataataagcttatgctg
gaaagcagcagccttaaaggttcaattttgtataaatctattatggatgattatatatcc
tatatagaaactaaggactcagaaattgaagatataaaagtggataaatatgttctgttt
tactctgaagatataaaaagactttttataaaagatatgaaacatctacctatagataag
agaaaagatgagataaaaagatattttatgattaaatttaatgatagaattttagaaata
atggaaaaagtggtatttaaatatgaatataatatagctagaataaaaaagcttatggaa
gatggtcctgaaagaagaaaaaaaataatagaactttatgacgaaagagataccagtaaa
aaatatatattaaaatcagcaaaacataatatagaagagtactttgaaaactggaagcat
aaagatacaaaagaacttatttataaactttttaatgatgaaaatatatttgataatgtg
gttaaaaacaatatatcaaaggaattgtcacaatatataaaagatgaattaaatcatagt
ctagagaagggtatcgtggatagtgatgatttatcctctatgatttatttgaaatttaga
attgagggtgtggaagaaaaatttagatttaaacatattgttatagatgaagcacaggat
tatagtccttttcaatactatataattaaagatatggcaaaaaataattcctatactata
gtaggggatattggtcagggaatttattattacaaaggtgtaaatgattgggaaaagttt
attaaagaagtatttaacaatgaagggaactatgtgcagttaactcaaagttatcgttct
acagtagaaattatagattttgccaataaagtattaattaagcagaaaaatagtcttaaa
cctgcaaaacctgtgctaagacatggagctaaacctgaaatcaaagaattccaaaataac
aaggattttgcttgtaatttagatgaaatagtaaatcattgtgaaaaaattggtaaaagc
aatgtggctgtaataggaaaaacctatgaagaatgcaaaaagataaaaggatttttgaaa
aaatacagcaattataattggaatataataaaggatacggataagaatgtaaatttagaa
aagataattattccatcttatatgactaagggattagaatttgattgtagtgttatatat
aattgtgatgaaggaaattacaatgacagtgaatttgataaaaagatattatatgttgta
cttacaagagctctgcatctagaatatattttttataataaaaagttatcatctctttta
tctgatgtataa
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