Clostridium pasteurianum DSM 525 = ATCC 6013: CLPA_c37460
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Entry
CLPA_c37460 CDS
T03753
Symbol
mfd
Name
(GenBank) transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
cpat
Clostridium pasteurianum DSM 525 = ATCC 6013
Pathway
cpat03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cpat00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CLPA_c37460 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cpat03400
]
CLPA_c37460 (mfd)
Enzymes [BR:
cpat01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CLPA_c37460 (mfd)
DNA repair and recombination proteins [BR:
cpat03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
CLPA_c37460 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
UB2H
IstB_IS21
RecG_dom3_C
MFD_D3
Motif
Other DBs
NCBI-ProteinID:
AJA53773
UniProt:
A0A0H3JBI4
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All DBs
Position
complement(4003338..4006853)
Genome browser
AA seq
1171 aa
AA seq
DB search
MRFRGLIQPLRESKEFINVMYNINKSKFPIEVSGLSESGRSYFIYTIYEEINRPLVVVAD
NDVEAKKIYEDLSLYLSNVYYFPTKEIVFYNLDAVSGDLRWERIKVIREILTKGRKIVVT
SIEAFSPYYVPVELYRKYSYNLGLGDAIDLEKFSKELILSGYERVETVDSKGQFSIRGGI
FDIFPPISNMPYRIEFFGDEIDSIRTFNTGSQRSIEKVNKIDIFPAKEIVLEEGNIKTGY
NFIKQELDNVLEKIKEKGNEESQKKIGSIIKRNLETLKESSTFETIDSFLPFFYEKPSTF
FDYIEDAIVIVEDDLRCKGKLNSVYFEFQENYKSFLEKGDILPSQGKLLFPQEEVYEMLN
NNKVINMTAIEKSKGFLRSTYCENFREITLSNFGGVLELLINEIKDKKDKGYKTVILCGS
KPRGERLVNTLRDRGIESSYRNEIQNIQFGEIIITFGSLNKSFEYPDLKLCVISDKEIFG
ESKRRSKKKPQKGVSKIKSFAELKPGDYIVHVNHGIGVYKGIEQLEVEGHKKDYLELTYS
GDDKLFVPVEQLDLVQKYIGSDGNSPKINKLGGNEWSKAKNKVRKSINEIAEELVKLYAI
RSTLKGYTYSNDTVWQKQFEDEFPYDETPDQLSAIEDIKQDMEVGKVMDRLLCGDVGYGK
TEVAVRIAFKAVMDGKQVAFLVPTTILAEQHYTNFKKRFSDFPVKIDMISRFRTSAQQKS
TIKALKEGNVDILIGTHRILQKDVQFKDLGLLIVDEEQRFGVTHKEKIKNLKKNIDVLTL
TATPIPRTLHMSLTGVRDISVMETPPEERYPVQTYVVEYNDQLIRDAIMRELNRGGQVFF
VYNRVETINDMAGTLAKLLPEAKIAVAHGQMTERELETEMLGFMNKEYDILLCTTIIETG
IDIQNVNTMIIYDADRMGLSQLYQLRGRVGRTNRMAYAYFTYRKDKVLTEVAEKRLKAIK
EFTELGSGFKIAMRDLEIRGAGNMMGSAQHGHMASIGYDLYCRMLEDAIKQYKGDIEKEP
IETFIDIKVDAYIPNSYIKNEIQKIEIYKKIASIESKDEFLDIQEELEDRYSDIPPSVSN
LMHIAYIKSLARQLGVIDIKDKKDFINVKFNDKDRITDCLVKNLIKDYNKSIIFKVDDKP
MIIYNLKNLKREELLNNLTKLFQYMIDVINN
NT seq
3516 nt
NT seq
+upstream
nt +downstream
nt
atgaggtttagggggcttatccagcctttaagagaaagcaaagagtttataaatgtcatg
tataatataaataaaagtaagtttccaattgaagtatcggggttatctgagtctgggaga
agttattttatctatactatatatgaagaaataaataggcctcttgtggttgtagcagat
aatgatgtagaggcaaaaaaaatatatgaagatctatctttatatttatcaaatgtatat
tattttcctactaaagaaatagttttttataatttagatgcagtttcaggtgatttgaga
tgggaaagaataaaggtcataagagaaatacttactaaaggtagaaaaatagtagttact
tcaattgaagctttttcaccttattatgttcctgtagaattatatagaaaatattcatat
aatcttggattgggagatgctattgatttagaaaaatttagtaaagaactcattttatca
ggttatgagagagtggaaactgtagatagcaaaggacaattttctataagaggaggaata
tttgatatatttccaccaatatctaatatgccctatagaattgaattctttggagatgag
attgactctataagaacttttaatacaggatcccaaagaagtattgagaaagtgaataaa
attgatatattcccagcaaaagaaattgttttagaagaaggtaatattaaaacaggatat
aattttataaagcaagaacttgacaatgtattagaaaagattaaagaaaaaggtaatgaa
gaatctcaaaagaaaataggtagtataataaaaagaaatttagaaactttaaaagaatct
tctacctttgagactatagatagttttttacctttcttttatgaaaaaccatctacattt
tttgactatattgaggatgcaatagtaatagttgaagatgacttaaggtgtaaaggaaag
ttaaatagtgtatattttgaattccaagaaaattataaatcatttcttgaaaaaggagat
atattacctagtcaaggaaaacttctttttccacaagaagaagtttatgagatgttaaat
aacaataaagtaattaatatgactgcaattgaaaaatctaaaggatttcttagaagtaca
tattgtgagaattttagagaaataactttaagtaattttggtggagttcttgaattactt
ataaatgaaattaaggataaaaaagataaaggatataagactgttatattatgcggaagt
aagccgagaggagaaagattagtaaatacacttagagatagaggcatagagagcagttat
agaaatgaaatacagaatatacaatttggagaaatcataattacctttggaagtcttaac
aaaagttttgaatatcctgatttaaaactttgtgttatttctgataaggaaatttttggt
gagtcaaaaagaaggtcaaaaaagaaacctcaaaaaggtgtaagtaaaataaagagtttt
gctgagcttaaaccaggggattatatagttcatgtaaatcatggaataggagtatataaa
ggtatagagcagctggaagttgaagggcataagaaagattatttagaattaacttattct
ggtgatgataaattatttgttccagtagaacaattggatttagtgcaaaaatatataggc
agtgatggaaattctccaaaaataaataaacttggaggtaatgagtggagtaaggcaaaa
aataaagttagaaaatccattaatgagatagcagaagaactggttaaattatatgccata
agatctacattaaaaggatatacctattcaaatgatactgtttggcaaaaacaatttgaa
gatgaattcccttatgatgaaactccagatcagttaagtgctatagaggacataaagcag
gatatggaagtcggaaaagttatggataggttattgtgtggtgatgtaggatatggtaag
acagaagttgcagtgagaatagcctttaaagcagttatggatggaaaacaagtggccttt
ttagttcctactactatacttgcggaacaacattatacaaatttcaaaaagagattttct
gatttccctgtaaagatagatatgataagcagatttagaacttctgctcagcaaaaatct
acaataaaagccctgaaggaagggaatgtagatatacttatagggactcatagaatatta
caaaaggatgtacaatttaaagatctaggacttttaattgtagatgaagaacagagattt
ggagtaacacacaaggaaaaaattaaaaatttgaagaaaaatatagatgtattgacactt
acagcaacacctatacctagaactcttcatatgtctcttacaggggttagggatataagt
gttatggaaacccctccagaagagagatatccagtacagacttatgtagttgaatataat
gatcaacttataagagatgctattatgagagaattaaatagaggtggacaggtatttttt
gtatataatagagttgaaactataaatgatatggcaggaactttagctaaattgctgcca
gaagccaagatagcggtggcacatggacaaatgacggaaagagaattggaaactgaaatg
ctaggttttatgaataaagaatatgatatacttttatgcactactataattgaaactggt
attgatattcaaaatgttaatacaatgattatatatgatgcagatagaatgggattatct
caactttatcagcttagaggacgagtaggaagaacaaatagaatggcttatgcttatttt
acttatagaaaagataaagtattaactgaggtggcagaaaagagattaaaagcaataaag
gaatttacagagcttggttctggatttaaaatagctatgagagatttagaaataagaggt
gccggtaatatgatgggatcggcccaacatggtcatatggcttcaataggttatgatttg
tattgtagaatgcttgaagatgctataaaacaatataaaggcgatatagaaaaagaacct
attgagacttttatagatatcaaagtggatgcatacataccaaattcttatataaaaaat
gagattcaaaaaatagaaatttataagaagattgcttctattgaatcaaaagatgaattc
ttagatatacaggaagaattagaagatagatactccgatatacctccttctgtttctaat
ttaatgcatattgcttatattaaatccttggcaagacagttaggtgtaattgatattaaa
gataaaaaagattttataaatgttaaatttaatgataaagacagaattactgattgcctg
gtgaaaaatttaattaaagattataacaagagtataatttttaaagttgatgataaacct
atgattatatataatttaaaaaacttaaagagagaagaacttttaaataatttgactaaa
ctatttcaatatatgatagatgtaattaacaattaa
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