Cupriavidus pauculus: EHF44_08080
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Entry
EHF44_08080 CDS
T05738
Name
(GenBank) RNB domain-containing ribonuclease
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
cpau
Cupriavidus pauculus
Brite
KEGG Orthology (KO) [BR:
cpau00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
cpau03016
]
EHF44_08080
Enzymes [BR:
cpau01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
EHF44_08080
Transfer RNA biogenesis [BR:
cpau03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
EHF44_08080
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNB
SH3_YKFC_2nd
DUF7167
Motif
Other DBs
NCBI-ProteinID:
AZG13404
UniProt:
A0A3G8GZ07
LinkDB
All DBs
Position
1:1385511..1387631
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AA seq
706 aa
AA seq
DB search
MQLLFEEGGEIRAGTVLAQQGEAYQVELPAGKRTKVKAKDVLLQFAQPSASEMVRQTGEL
TAEIDLDFLWECAPAEEFGFADLAAEYYGADAGAVQQAALAMALHGNPVYFRRKGRGRYL
RAPEDQLKAALAAVERKKQQLLVQAEYEAQLKAHQLPDAFRGKVLQLLFKPDKNSLEFKA
MDAACTALGMTPMRLMVAVGGVESPRALHEAKFLADCFPKGTGFPDVAVPDPSGSLPVAD
VEAFSIDDVTTTEIDDALSVTRLADGKLRVGIHIAAPGLGFTRGEPLDAIARQRLSTVYF
PGDKITMLPDSVVERYTLQEGRTCPALSLYVTVDPDTPDGLAIVGSETRAELVPIAANLR
HNLLEDVVTEAALASGTGDYPFRKQLGELFRLANHLHDERQKARLASGLRPEAHNRADFN
FYIDSVDGGGERVRIEQRRRGSPLDKIVAELMILANSTWGKLLADHGVPGIYRTQKAWGM
HRTRMQTYPAPHEGLGVAQYAWSTSPLRRYVDLVNQWQILAVAQHGVTAKLVAPFKPKDA
DLLAAVADFEGTYAAYADHQSTMERYWCLRWIAQENRGKLMATVLKDGAVRFAEIPLVTR
VPELAQAVRGTQVLLEIASTDEISLEVSCRVLEIFAGEGELPEEELEGDTEDEMAEVSAE
AAAEAAAEDAAEAAAEGGTEGAADAPAETAPDDASAPRDTGANPPA
NT seq
2121 nt
NT seq
+upstream
nt +downstream
nt
atgcagttgctgttcgaagaaggcggcgaaatccgcgccggcaccgtccttgcccaacag
ggcgaggcctaccaggtggaattgcccgcgggcaagcgcaccaaggtcaaggcaaaggac
gtgctgctgcagtttgcccagccgtcggccagtgaaatggtgcggcagaccggcgagctg
accgccgagatcgacctcgacttcctctgggaatgcgcgccggccgaggaattcggcttt
gccgacctggctgccgaatactacggggccgatgccggcgcagtgcagcaggctgcactt
gcgatggcactgcatggcaatcccgtctatttccgccgcaagggccgcggccgctacctg
cgcgcgcccgaagaccagctcaaggccgccctggccgccgtggagcgcaagaagcagcag
ttgctggtgcaggccgagtacgaggcccagctcaaggcgcaccagttgcccgacgcgttc
cgcggcaaggtgctgcaactgctgttcaagcccgacaagaacagtctcgaattcaaggcc
atggacgccgcatgcacggcgctgggcatgacgccgatgcgcctgatggtggccgtgggc
ggcgtggaaagcccgcgcgcgctgcacgaggccaagttcctggccgactgcttcccgaag
ggcaccggcttcccggacgtggccgtgccggacccgtcgggcagcctgcccgtggccgac
gtggaggcgttctcgatcgacgatgtcacgacgaccgagatcgacgatgcgctgtcggtg
acgcgcctggccgacggcaagctgcgcgtgggcatccacatcgccgcgccgggcctgggc
ttcacgcgcggcgagccgctcgacgccattgcccgccagcgcctgtccacggtctatttc
cccggcgacaagatcacgatgctgcccgacagcgtggtggaacgctacacgctgcaggaa
ggccgcacctgcccggcgctgtcgctgtacgtgacggtggacccggacacgccggacggc
ctggccatcgtcggcagcgagacgcgcgccgaactggtgccgattgccgccaacctgcgc
cacaacctgctggaggacgtggtcaccgaggccgcgctggccagcggcaccggcgactac
ccgttccgcaagcagcttggcgaactgttccggctggccaaccacctgcacgacgagcgc
cagaaggcgcgtctggccagcggcctgcgcccggaggcgcacaaccgcgcggacttcaac
ttctatatcgattcggtggacggcggcggcgagcgcgtgcggatcgagcagcgccggcgc
ggatcgccgctggacaagatcgtggccgagctgatgatcctggccaacagcacgtggggc
aagctgctggccgaccacggcgtgccgggcatctaccgcacccagaaggcgtggggcatg
caccgcacgcgcatgcagacctacccggcgccgcacgaggggctgggcgtggcgcagtac
gcgtggagcacgtcgccgctgcgccgctacgttgacctggtcaaccagtggcagatcctg
gcggtggcccagcatggcgtgaccgccaagctggtggcgccgttcaagcccaaggacgcc
gacctgctggccgccgtggcggacttcgaaggcacctacgcggcctatgccgaccaccag
tcgaccatggagcgctactggtgcctgcgctggatcgcgcaggaaaaccgcggcaagctg
atggccacggtgctcaaggacggcgcggtgcgctttgccgagatcccgctggtgacgcgg
gtgccggaactggcgcaggccgtgcgcggcacgcaggtgctgctggagattgcgtcgacc
gacgagatctcgctggaagtgtcgtgccgcgtgctggagatctttgccggcgagggcgaa
ctgccggaagaggaactggaaggcgacaccgaggacgagatggcggaggtttccgccgag
gcagccgccgaggcggcggccgaggatgccgccgaagccgcagcggaaggtggcaccgaa
ggcgccgccgatgccccggccgagacggccccggacgatgcgtcggcgccacgcgacacc
ggcgccaacccccccgcctga
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