Cupriavidus pauculus: EHF44_09980
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Entry
EHF44_09980 CDS
T05738
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
cpau
Cupriavidus pauculus
Pathway
cpau02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
cpau00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
EHF44_09980 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cpau03021
]
EHF44_09980 (rpoD)
Transcription machinery [BR:
cpau03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
EHF44_09980 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
SPO22
Motif
Other DBs
NCBI-ProteinID:
AZG13752
UniProt:
A0A3G8H2P7
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All DBs
Position
1:1800287..1802857
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AA seq
856 aa
AA seq
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MAKAKATERAAEKAPSKAPQSGSGKASVKTTAAKTSTASVRTTSARSAPAKSVRSAPAPA
GTTSARNRTSENTRPSTSARESGSSANTSGSNAAAPVKGKSITVAKQQNTEVESKRAATT
AGTRSSSARAGATAAAPKARAATPASVASERTAAPAVKPEPKKRGRKPKAEMQQEDSTIE
DVTEEFYENDAPATPAAAPKTEKQKAKDRKAKEKALLKEFASSNQAGSEEELELRRQKLK
ALIKLGKSRGYLTYAEINDHLPDDMVDSETIDTLVATLNDIGIAVYEQAPDAETLLLNDN
APSATSEEEAEEEAEAALSTVDSEFGRTTDPVRMYMREMGTVELLTREGEIEIAKRIEAG
LKDMVMAISACPVTISEILASAERVANEEIKIDEFVDGLIDPNAEEVQDNSPAQAAASDE
EDEESDEDGDEEGDEDEDDESGGGAGASARQLEELKVAALEKFRIIAEQFDKMRRAFEKE
GYKSKPYVKAQEAIQAELMGIRFTARNVERLCDTLRGQVDEVRKLERAILNIVVDKCGMP
RADFVARFPGNETNLDWIQTIVADHKPYSTIVERNVPAVHELQQKLIDLQARVVLPLKEL
KDVNRKMSEGEKRAREAKREMTEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDK
FEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKMNRISRQILQETGNEP
DPATLAEKMEMPEDKIRKIMKIAKEPISMETPIGDDDDSHLGDFIEDTNTLAPAEAALHG
SMRDVVKDVLDSLTPREAKVLRMRFGIEMSTDHTLEEVGKQFDVTRERIRQIEAKALRKL
RHPSRSDKLKSFLEGS
NT seq
2571 nt
NT seq
+upstream
nt +downstream
nt
atggcaaaggccaaagcaaccgaaagggcagccgagaaggcgccctccaaagctccccaa
tcagggagcggcaaggcgtccgtgaaaacaacggcggcgaagacttcgaccgcgtcagtc
aggacgacatcagcccggtctgcgccagcaaagtccgtgcgaagcgctcccgcgcccgcc
ggaaccacttccgccaggaatcgcacatccgaaaataccaggccctcgacttcggcacgc
gagagcggcagcagcgccaatacaagcggcagcaatgccgctgcaccagtgaaaggcaag
agtatcaccgtggcgaaacagcagaataccgaagtcgagagcaagcgtgcggcaacgacg
gccggcacccgcagcagcagcgcccgcgcaggcgctactgccgccgcgccgaaggcccgt
gccgcgactcccgcatccgttgcatccgagcgaaccgccgctccggccgtcaagcctgag
ccgaagaagcgcggtcgcaagcccaaggccgagatgcagcaagaagacagcaccatcgaa
gacgtgaccgaagagttttacgaaaacgacgcgcccgcgaccccggcggcggccccgaag
accgagaagcagaaggccaaggaccgcaaggccaaggagaaggcgctgctcaaggaattc
gcctcgtccaaccaggccggcagcgaggaagaactcgaactccgccgccagaagctcaag
gcgctgatcaagctgggcaagtcgcgcggctacctgacctacgcggaaatcaacgatcac
ctgccggacgacatggtcgattcggaaacgatcgacacgctggtcgccacgctgaacgac
atcggcatcgccgtctacgaacaggcgccggacgccgagacgctgctgctcaacgacaac
gccccgtccgccaccagcgaggaagaggccgaggaggaagccgaggccgcgctgtcgacc
gtggattccgagttcggccgcaccacggaccccgtgcgcatgtacatgcgcgagatgggt
acggtggaactgctgacgcgcgagggcgagatcgagatcgccaagcggatcgaagccggc
ctgaaggacatggtcatggccatctcggcctgcccggtcacgatctcggagatcctggcc
agcgccgagcgcgtggccaacgaggagatcaagatcgacgagttcgtcgacggcctgatc
gacccgaacgccgaggaagtgcaggacaactcgccggcccaggccgcggcttccgatgag
gaagacgaggaatcggacgaggacggcgacgaggaaggcgacgaggacgaggacgacgag
agcggcggcggcgccggcgcgtcggcccgtcagctcgaagagctgaaggtggccgcgctg
gagaaattccgcatcatcgccgagcagttcgacaagatgcgccgcgcgttcgagaaggaa
ggctacaagtccaagccgtatgtgaaggcgcaggaagccatccaggccgaactgatgggc
atccgcttcaccgcccgcaacgtcgagcgcctgtgcgacacgctgcgtggccaggtggac
gaagtccgcaagctggagcgcgccatcctgaacatcgtggtcgacaagtgcggcatgccg
cgcgccgacttcgtggcccgcttcccgggcaacgagacgaacctggactggatccagacc
atcgtggctgaccacaaaccgtacagcacgatcgtcgagcgcaacgtgccggccgtgcac
gagctgcagcagaagctgatcgacctgcaggcccgcgtggtgctgccgctcaaggagctg
aaggacgtcaaccgcaagatgtccgaaggcgagaagcgcgcccgcgaagccaagcgtgaa
atgaccgaggccaacctgcgcctggtgatctcgatcgcgaagaagtacacgaaccgtggc
ctgcagttcctggacctgatccaggaaggcaacatcggcctgatgaaggcggtggacaag
ttcgaataccgccgcggctacaagttctcgacgtacgccacgtggtggatccgccaggcc
atcacgcgctcgatcgccgatcaggcccgcaccatccgtattccggtgcacatgatcgag
acgatcaacaagatgaaccggatctcgcgccagatcctgcaggaaaccggcaacgagccg
gatccggcaacgctggccgagaagatggagatgccggaggacaagatccgcaagatcatg
aagatcgccaaggagccgatctccatggaaacgccgatcggggacgacgacgactcgcat
ctgggcgacttcatcgaggacacgaacacgctggccccggccgaggcggcgctgcatggt
tccatgcgcgacgtggtcaaggacgtgctcgacagcctgacgccgcgcgaagccaaggtg
ctgcgcatgcgtttcggcatcgagatgagcaccgaccacacgctggaggaagtgggcaag
cagttcgacgtcacgcgcgagcgtatccgtcagatcgaggccaaggcgctgcgcaagctg
cgccacccgagccgctccgacaagctgaagagcttcctggaaggcagctaa
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