Chlorobium phaeobacteroides BS1: Cphamn1_0072
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Entry
Cphamn1_0072 CDS
T00709
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
cpb
Chlorobium phaeobacteroides BS1
Pathway
cpb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cpb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Cphamn1_0072
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpb03019
]
Cphamn1_0072
03400 DNA repair and recombination proteins [BR:
cpb03400
]
Cphamn1_0072
Enzymes [BR:
cpb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Cphamn1_0072
Messenger RNA biogenesis [BR:
cpb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Cphamn1_0072
DNA repair and recombination proteins [BR:
cpb03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Cphamn1_0072
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
DUF6106
Motif
Other DBs
NCBI-ProteinID:
ACE03055
UniProt:
B3EJY7
LinkDB
All DBs
Position
complement(67205..69229)
Genome browser
AA seq
674 aa
AA seq
DB search
MSTRTAHDNFSRFLYEKKSFFQNNATWFSEQIKDKDRYRMLQTVPGNHFDRKKSMTNEPR
QPVPDKALFDTLHKVFGFHSFRPNQENIVRAILDGRDVFAVMPTGGGKSLCYQLPAVLLS
GTCVVISPLIALMKDQVDGARANGIRAAYLNSSLSPEEQASVQQELLSDSLDLLYVAPER
FRLEHFQKLLGEVNISMAVVDEAHCISEWGHDFRPDYLLLSALVQLFPGVPVAAFTATAT
LKVQQDILHKLSLRDPLLVRASFDRSNLFYDIRFKENANAQLVSILKSNPGQAGIIYRTS
RKSVNETAALLKAKGFRALPYHAGLSDEERQRNQEAFIRDEADIIVATIAFGMGIDKSNI
RLVIHADLPKSIESYYQETGRAGRDGEPARCTLLFSQSDIPKIRFFIDTIVDETERGKAL
SSLQKVISFVSTSVCRRKTLLDYFDETYPHDNCKSCDICLGTREVVDSTVEAQMLLSAIA
RTEERFGATHIVDIVTGSKNQKIRDFGHDRLKTYGVGKGRSKKFWRQLIDELLAQKVIAK
SEGLYPALYLLEKAVPLLKGEEKLEIVRIQEPKKAKTSKAAEEGSWDHNLFDLLRSLRKE
IADEQNIPPYIVFSDRSLRDMATVHPVTGEAMLSVSGVGEVKLERYGRRFLQLIGRYREE
HPESASAHKKHSSP
NT seq
2025 nt
NT seq
+upstream
nt +downstream
nt
atgagcactcgaaccgctcatgacaatttttcgaggttcctttatgaaaagaagagcttc
tttcaaaataatgcaacatggttctctgaacagataaaagacaaagacagatatcgtatg
ttgcagactgtaccaggcaatcactttgacagaaagaaatccatgacgaacgaaccgcgg
caacccgtacccgataaagcgcttttcgataccctgcacaaggtgttcggatttcattcg
ttcaggccgaatcaggagaacatcgtgcgggcgatcctcgacgggagggacgtgttcgcc
gtcatgccgaccggcggcggcaaatcgctctgctaccagctgccggcggtactgctttcc
ggaacatgcgtggtgatcagcccgctgatcgcgctcatgaaggaccaggtggacggagcg
agagccaacggcatccgggcggcatacctgaacagctccctctcgcctgaagaacaggcg
tccgtgcagcaggagctgctttcagactcgctggacctgctctatgtcgcgccggaacgg
ttccgtctcgagcatttccagaagctgctcggagaggtgaacatcagcatggcggttgtc
gatgaagcgcactgcatttcggaatggggccatgatttccgtcccgattacctcttgctc
tcggctcttgtgcagctttttcccggtgtcccggtggctgctttcacagcaacggccacg
ctgaaagtccagcaggatattctccataaactctctcttcgcgacccgcttctcgtcagg
gcttcgtttgaccggtcgaacctcttctatgacatccggttcaaggaaaacgccaacgct
cagcttgtctccatcctgaaaagcaacccgggacaagcgggaatcatctaccgtaccagt
cgtaaaagcgttaacgagaccgctgctctgctgaaagcaaaagggttccgggctcttcct
taccatgcagggctgtccgacgaagaacgccagcgaaatcaggaggcattcatccgggac
gaggctgatatcatcgtcgccaccatcgccttcggcatggggattgataaatcgaatatc
cgcttagtgattcatgcggacctgccgaaaagcatcgaaagctactaccaggaaaccggc
agagcaggccgcgacggcgaacccgcgcgctgcacgctgctcttttcacaatccgacatc
cccaaaatccggttcttcatcgacacgatcgttgacgaaacagaaaggggcaaggctctc
tcttctctgcagaaggtcatttcgttcgtttcgacttcggtctgtcgtcgcaaaaccctg
cttgactactttgacgaaacatacccgcatgataactgcaaatcctgcgatatctgtctc
ggtacccgcgaagtggttgacagcacagtagaagcgcagatgctgctctcggcaatcgcc
cgtacggaagaacgtttcggcgcgacgcacatcgtcgatatcgtcaccggcagcaagaac
caaaaaatccgtgactttggtcatgaccgcctgaaaacctacggagtgggaaaaggccgg
agcaaaaaattctggcgccagcttatcgatgaacttctggcacaaaaagtgatcgccaag
tcagaaggactctatccggcgctctacctgcttgaaaaagcggttccattgctgaaaggg
gaggagaagctggaaatcgtgcggatccaggaaccgaaaaaggcaaaaacctcaaaagcc
gcagaagagggatcctgggaccacaacctgtttgacttgctgagatcattgcggaaagag
atcgcagacgagcagaacatccccccctatatcgtcttttccgaccgctcgctgcgcgac
atggcaacagtgcatcccgtgaccggagaagccatgctgtcggtgtcaggagtaggtgaa
gtgaagcttgaacgctacgggcgccggtttctccagctcatcggacggtatcgggaggaa
cacccggaatcagcatccgctcataaaaagcattcctctccctga
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