| Entry |
|
|---|
| Name |
(GenBank) DNA-directed RNA polymerase, beta' subunit
|
|---|
| KO |
|
|---|
| Organism |
cpb Chlorobium phaeobacteroides BS1
|
|---|
| Pathway |
|
|---|
| Brite |
KEGG Orthology (KO) [BR:cpb00001]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Cphamn1_0320
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:cpb03021]
Cphamn1_0320
03400 DNA repair and recombination proteins [BR:cpb03400]
Cphamn1_0320
Enzymes [BR:cpb01000]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Cphamn1_0320
Transcription machinery [BR:cpb03021]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Cphamn1_0320
DNA repair and recombination proteins [BR:cpb03400]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Cphamn1_0320
|
|---|
| SSDB |
|
|---|
| Motif |
|
|---|
| Other DBs |
|
|---|
| LinkDB |
|
|---|
| Position |
319234..323730
|
|---|
| AA seq |
1498 aa
MIFSQGVSPFKGDFSKIKFSIASPESILAHSRGEVLKPETINYRTFKPERDGLMCEKIFG
PTKDWECYCGKYKRVRYKGIICDRCGVEVTMKSVRRERMGHISLAVPVVHTWFFRSVPSK
IGALLDLSTKELERVIYYEVYVVINPGEPGEKQGIKKLDRLTEEQYFQIITEYEDNQDLD
DNDPAKFVAKMGGEAIHTLLKGLELDTQAVDLRKILRESGSEQKRADALKRLKVVEAFRK
SFEPVKKTRKKSTGLFPEDEAPEPYVYEGNKPEYMVMEVIPVIPPELRPLVPLEGGRFAT
SDLNDLYRRVIIRNNRLKKLIDIRAPEVILRNEKRMLQEAVDALFDNSRKANAVKTGESN
RPLKSLSDALKGKQGRFRQNLLGKRVDYSGRSVIVVGPELKLHECGLPKSMAIELFQPFV
IRRLVERGIAKSVKSAKKLIDKKDPIVWDVLEKVIDGRPVLLNRAPTLHRLGIQAFQPVL
IEGKAIQIHPLVCTAFNADFDGDQMAVHVPLSQEAQLEATLLMLSSHNLILPQSGKPVTV
PSQDMVLGMYYLTKSRLGEKGQGKLFYGTEEVMIAFNEERIGLHALVFVHYDGRIEQKFD
PLRMLDIIPDDQPEQKEWLKTKIGENKILVTTVGRVLFNRYVPEKIGFINKVIDKKGAKD
LISKLSSEVGNVATAEFLDNIKQVGFHFAMKGGLSIGLADAIIPEVKVQHIKKATKESTK
IVREYNRGTLTENERYNQIVDVWQKVTNLVAEESYQKLRKDRSGFNPLFMMLDSGARGSR
EQVRQLTGMRGLIARPQKSMSGQPGEIIENPIISNLKEGLTVLEYFVSTHGARKGLSDTS
LKTADAGYLTRRLHDVAQDVIVTEDDCGTTRGIHVERGIEEETGGQIKFSEKIRGRVASR
DIVDNLNDVVILPAGGIITDEIADAIQKNAGVVEADIRSVLTCEAKQGICSKCYGTNLSV
HKLVEIGEAVGVIAAQSIGEPGTQLTLRTFHQGGTAQGGIAETETKSSMDGQVEFESIRS
VEQETINEDGMPETVTLVIQKNGKINILDPDSGKFLKRYEVPHGAHLVCKNGDIVKKDDV
LFSSEPNSTQIIAEVEGEVKFVDIDKGVTYKEEVDPQTGYVQHVIINWRTKLRASETREP
RILIVDKEGETLKTYPVPIKSNLFIENGKKVKIGDMLAKVPRNLDRVGGDITAGLPKVTE
LFEARIPSDPAIVSEIDGYVGFGPQRRSSKEIKVKNEFGEEKNYYVQVGKHVLANEGDEV
TAGEPLTDGAVSPQDILRIQGPNAVQQYLVNEIQKVYQINAGVEINDKHLEVIVRQMLQK
VRVEEPGDTELLPGDLIDRTMFIRANSDVSEKVRVTSKGDAPARIHEGQLYKTREIIKLN
RELRRNSKQLIDVEPALQATSHPVLLGITSAALQTESVISAASFQETTKVLTDAAVAGKI
DNLAGLKENVIVGKLIPAGTGLKKYLKLSLDMLAEGKESADALAEEEAGAAESGEDDA |
|---|
| NT seq |
4497 nt +upstreamnt +downstreamnt
atgatattttcacagggagtttcacctttcaaaggtgatttttcaaagataaaattcagc
atcgcatctcctgaaagcattcttgcgcattcacgaggagaggtgctaaaaccggagact
atcaattatcgcacattcaagcctgagcgtgacggcctgatgtgtgagaaaatattcggc
cccacgaaggattgggaatgttattgcggcaagtacaaacgcgtcaggtataaaggtatt
atctgtgaccgctgcggagtcgaggtgaccatgaagagcgttcgtcgtgaacgtatgggg
cacatctctcttgccgttccggttgttcatacatggtttttccgctctgttcccagcaaa
atcggtgccctgctcgatctttcaaccaaggaacttgaacgggtcatctactatgaggtc
tatgtggtgatcaatcccggtgaaccgggagagaagcagggaataaaaaaacttgatcgc
ctgacagaagagcagtatttccagatcataaccgagtacgaggacaatcaggatcttgac
gataacgatccggcaaagttcgtggccaaaatgggtggagaagccattcatacacttctt
aaaggactcgaactcgatacacaggctgttgatcttcgcaaaatactcagggagagcggt
tcagagcagaagagagccgatgccctcaaacgccttaaggttgtcgaggcattcagaaaa
agtttcgagccggtaaaaaagacaagaaagaagtccaccggtcttttccccgaggacgaa
gctcctgaaccctatgtgtatgaaggtaacaagccggaatacatggtaatggaggttata
ccggtcatacctcctgaattgcgtccgcttgtccctcttgaaggagggcggttcgcgacc
tccgatcttaatgatctttatcgcagggtcattatccggaataaccgcttgaaaaagctg
atcgacattcgtgcaccggaggttattctgcgtaatgagaaaagaatgctgcaggaagct
gtcgatgctcttttcgacaactcacgcaaagccaacgcagtgaaaaccggtgagtcgaac
aggcccctgaaatcactttccgatgctctcaagggaaaacagggcagattccgtcagaac
ctgctcggtaagcgagttgactattccggaaggtcggtcattgttgtcggaccggagctc
aaactgcatgagtgcggactgccgaaaagcatggcaatcgagcttttccagccgtttgtt
atcagacgcctcgtggagcggggtatcgcgaaatccgtgaaatcagccaaaaagcttatt
gataaaaaggatccgatagtctgggatgtacttgaaaaagttattgacggacgtcctgta
ctgctcaaccgtgctccaacgcttcatcgtttgggtattcaggcttttcagccggtgctg
atcgaaggcaaggcaatacagattcacccgctggtctgtacggcgttcaacgctgacttt
gatggtgaccagatggcggttcacgtcccgctttcgcaggaagcacaactcgaggcgaca
ctgctgatgctctcctctcacaacctcattcttccccagtcgggtaagccggttaccgtt
ccctctcaggatatggtgctgggtatgtactacctgacaaagtcaaggcttggggaaaaa
ggtcagggcaagctcttttatggaaccgaagaggtgatgattgcttttaacgaggagcgt
attggtcttcacgcgcttgtcttcgtgcactatgacggccgtattgaacagaagttcgat
ccgctgagaatgctcgatatcattccggatgatcagcctgaacagaaagagtggctgaaa
acaaagatcggggaaaacaagattctggtgacaacagtcggcagggtgttgtttaaccgg
tacgttccggaaaaaatcggctttatcaacaaggtgatcgacaaaaaaggggccaaggat
ctcatttccaagctctcaagcgaggttggaaacgtcgctacggccgagtttcttgacaac
atcaagcaggtcggcttccacttcgcaatgaagggagggctctctatcgggcttgctgat
gcgattattcctgaagtcaaggttcagcatatcaagaaggctaccaaagagagcaccaag
atcgtcagagagtacaatcgaggaacgctcacggaaaacgagcggtacaaccagattgtc
gatgtctggcagaaggtgacaaacctcgtcgcggaggaatcctaccagaagcttcgcaag
gaccgttcagggttcaatccgctgtttatgatgcttgattccggagctcgaggctcgaga
gaacaggtgcgtcagttgaccggtatgagagggcttatcgccaggccgcagaaatccatg
tccgggcagcccggtgagattatcgagaatccgattatttccaacctgaaagaggggctc
acggtgctggagtattttgtctctacccatggtgcccgaaaaggtctttccgatacatcg
ctcaaaacggctgatgcagggtatctgacaagaagactgcatgatgtcgctcaggatgtc
atcgtcaccgaagatgattgcgggacaaccagaggtattcatgtagaacgcgggattgaa
gaagagacaggcggtcagatcaagttcagtgaaaaaatccggggcagggtcgcttcgagg
gatattgtcgataacctgaacgatgtggtcattcttccggcagggggtatcatcaccgat
gagattgcagatgccatacagaaaaatgccggtgttgtcgaggccgatatccgatcggtg
cttacctgtgaggcaaaacagggtatctgttccaagtgttatggtaccaacctttcggtg
cacaaacttgtagaaataggtgaagcggtaggcgttatcgcagcacagtccatcggtgaa
ccgggaacacagctgacgcttcgtaccttccaccagggtggtacggcacagggcggtatt
gctgaaaccgagacaaagtcatctatggacggacaggttgaatttgaaagcatcaggagt
gtggaacaggagaccatcaatgaagacggcatgcctgaaaccgttactctggtgatccag
aagaacggcaagatcaatattctcgatcctgattcaggtaaattcctgaaacgctacgag
gtgcctcatggagcgcatcttgtctgtaagaacggagatattgttaaaaaagacgatgta
ctgttcagcagcgaaccgaacagtacgcagattattgcagaagtagagggagaggtcaaa
tttgtcgatatcgataaaggtgtcacctataaggaggaggttgaccctcagaccggatat
gtccagcatgtgattatcaactggcgcacaaaactccgggcttcggaaacaagagagccg
aggattctgattgtcgacaaagagggagaaaccctcaaaacctatccggtcccgataaaa
tccaatctgtttatcgagaacggaaagaaagtgaagatcggtgatatgctggccaaggtg
ccgagaaaccttgatcgtgtaggtggcgatattaccgcaggtcttccgaaggtaaccgaa
cttttcgaggcacgtattccatctgatccggcaatagtctctgaaattgacggttatgtc
ggcttcgggccgcaacgcaggagcagtaaggaaatcaaggtgaaaaacgagttcggagag
gaaaagaactactatgtacaggtcggtaagcacgttcttgccaatgagggcgacgaggtt
acagccggtgaaccgttgactgatggtgcagtttctcctcaggatattctgagaattcag
ggccctaacgccgtgcagcagtatctggtgaatgaaattcagaaagtctaccagatcaat
gccggtgttgagatcaatgacaagcatcttgaggttatcgtacgtcagatgctgcagaag
gtaagggttgaagagcctggtgataccgaactgcttccgggagacctcattgacagaacc
atgtttatccgggccaacagtgatgtcagcgaaaaggtacgtgtgacgtcaaaaggtgac
gcgccggcaagaattcatgaaggtcagctctacaagacccgtgagataataaaactcaac
cgtgagcttcgcagaaacagcaagcagctcatcgatgtcgagccggcattgcaggctact
tctcatccagtgcttctgggaataaccagtgcggctttgcagactgaaagcgttatctcc
gcggcttctttccaggaaaccaccaaggtgctgaccgatgccgcagttgccggaaagatc
gataatcttgccggcttgaaagaaaacgttattgtcggaaaactcattcctgcaggaacc
ggactcaagaagtacctcaagctgagcctcgatatgcttgctgaagggaaagagagcgcg
gatgctttggcggaagaagaagcgggtgcggcagaatcaggagaagatgatgcgtga |
|---|
