Chlorobium phaeobacteroides BS1: Cphamn1_0540
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Entry
Cphamn1_0540 CDS
T00709
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
cpb
Chlorobium phaeobacteroides BS1
Pathway
cpb03030
DNA replication
cpb03410
Base excision repair
cpb03420
Nucleotide excision repair
cpb03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
cpb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Cphamn1_0540
03410 Base excision repair
Cphamn1_0540
03420 Nucleotide excision repair
Cphamn1_0540
03440 Homologous recombination
Cphamn1_0540
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cpb03032
]
Cphamn1_0540
03400 DNA repair and recombination proteins [BR:
cpb03400
]
Cphamn1_0540
Enzymes [BR:
cpb01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
Cphamn1_0540
DNA replication proteins [BR:
cpb03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Cphamn1_0540
DNA repair and recombination proteins [BR:
cpb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
Cphamn1_0540
NER (nucleotide excision repair)
GGR (global genome repair) factors
Cphamn1_0540
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
DNA_pol_A_exo1
5_3_exonuc
DNA_polI_exo1
HHH_5
Motif
Other DBs
NCBI-ProteinID:
ACE03503
UniProt:
B3EMM5
LinkDB
All DBs
Position
complement(568792..571602)
Genome browser
AA seq
936 aa
AA seq
DB search
MVSLHKSDQSQLSFEMSTTAITEKPQGSKKPSLFLLDGMALVYRSFFALQRAGMSTKDGI
PTGAAYGFLMTLLKIFETGKPEYLAVAFDSKEKTFRHELYAPYKANRPEPPEDLIAQLEL
IFKLVEAFRIPILKQPGYEADDLIGSAVRQFEKQCEIVIVTPDKDLAQLVNEGVSILKPG
RNRNELDTMGCDEVKKQFGVPPECFIDFLTLTGDSSDNIPGAKGIGPKTASKLLTTYGTL
ENVLAHIEELAPRSRKSLEEFETNRKLIQALVTIRTDIELDTTLPELASGEPDSVKLFGL
LEKLEMNSVAEKIPHIFPGSTPPRTGLQEQSEPSFSPPEGAAYHLIDTEAALTELTNTLE
KQSSFSIDTETTSLNTFEAELVGISICWKPGEAYFIHFTDKELSAKTFPGKLQDVLENPD
IKKTGQNLKYDILVLKNHHVRLAPVGFDTMLASYVINPEEKHNLDDLAKKHLNHRTITYS
ELTGTGKKAIPIREVPIDRLTVYACQDADVALQLEQKQKILLGENSELEQLCVNIEFPLV
EVLADMEYLGIALDTAQLERTAETVNRQLLELTERIYDTAGTIFNIDSPKQLGNVLFNVL
GLPAKKTTKTGFSTNVQVLEDLSLIHPVAKDLLEYRSLQKLKTTYIDALPKILNPKTGRV
HTSFNQHITATGRLSSSNPNLQNIPIRTPLGREIRKAFIPSTSDRYLLSADYSQIELRIA
AEISQDSHLIDAFRNREDIHTATAKTIFDTDDITKDMRRKAKEVNFGVLYGIQPYGLAQR
LNISQKEAKAIIDTYISKYPGLFSALQTTITEAAEKGYVTTLTGRRRYIENLRSRNRNIR
MAAERAAMNTPIQGTAADIIKCAMGLVSEAIKKKRMQSAMLLQVHDELVFETTEEEKAAL
AEIAEGCMQKAAELCGLETVPVEVEIGTGKNWLEAH
NT seq
2811 nt
NT seq
+upstream
nt +downstream
nt
atggtgtcgttgcataagagcgatcagagtcaactgtcttttgagatgagcacgacagcg
atcacagaaaaaccgcaaggaagcaaaaaaccctccctttttctgcttgacggcatggcg
ctggtctaccggtcatttttcgccctccagcgcgcaggaatgtcaacaaaagacggaatt
ccgacaggcgccgcttacggatttctcatgaccctgctgaaaatatttgaaaccggtaag
cctgaatatcttgctgttgcttttgacagtaaggaaaaaacattccggcatgagctctat
gctccatacaaggcgaaccgtccggaaccgccggaagaccttattgcgcaactggagctg
attttcaagcttgtcgaagcgttccggatcccgattctcaagcaacccggttatgaagcc
gacgatcttataggaagtgccgtcaggcagttcgagaaacagtgcgagatagttatcgtc
acaccggacaaggatctcgcgcaacttgtcaatgaaggggtttcgatccttaaaccgggc
agaaacaggaacgaacttgataccatgggctgtgatgaggtcaaaaaacagtttggtgtg
ccgcctgaatgttttatcgattttctgaccctgaccggggacagttcggacaacataccc
ggcgcgaaaggaatcggaccgaaaaccgcctcaaagttgctcacgacctatggtactctg
gaaaatgtccttgcccatatcgaggaacttgcccccaggtcacgtaaaagtcttgaagag
ttcgagacaaaccgtaagcttatccaggctcttgttacgataaggacagatatcgaactt
gacactaccctgcctgagcttgcatccggagagcctgacagcgtaaaactgttcggtctg
ctggaaaaacttgaaatgaacagcgtcgcggaaaagataccgcacatctttccaggatca
actcctccccgaacaggccttcaggaacaaagcgagccttcattctctcccccggaagga
gccgcgtatcatctcattgataccgaagccgctctcacagaactcacgaatacacttgag
aaacagagctcgttttccatagatactgaaaccaccagcctgaacacttttgaagccgaa
cttgtcggcatttcgatctgctggaaaccgggcgaagcgtatttcattcactttacggat
aaagagctcagcgcaaagacttttcccggaaaactgcaggatgtacttgaaaatcctgac
atcaaaaaaacaggacagaatctcaagtacgacattctcgtactgaaaaatcaccatgta
cggctcgcgccggtcgggttcgataccatgcttgcaagctatgtcatcaatcccgaggag
aagcacaaccttgacgatcttgcaaaaaaacatctcaatcaccggacaatcacctacagt
gaacttaccggtacagggaaaaaagcgatcccgatccgtgaggttccgatcgatagactt
actgtctatgcctgccaggatgcggatgtcgctttgcagctcgaacagaaacagaaaata
ctgctcggagaaaacagcgagcttgaacaactctgcgtgaacatagagttcccgcttgtc
gaagtgcttgccgacatggagtacctgggaatcgctctcgatacagctcagctggaaaga
acggctgaaaccgttaaccgtcaactgctggaacttactgagagaatttatgataccgcc
ggaaccatctttaacatcgattcccccaaacagcttggaaacgtgcttttcaatgtcctt
ggactacctgcaaaaaaaacaacaaaaaccggtttctcgaccaatgtccaggtccttgaa
gatctctctcttatccatccggtggcaaaagatcttctggaatatcgcagcctccagaaa
ctcaagacaacctatattgacgccctgccgaaaatactcaatccgaaaacagggcgggtt
cacacctcctttaaccagcacataacagcgacaggcagactttcctcatcaaacccgaac
ttgcagaacatcccgattcgcactcctcttggcagagagatccgaaaagcgtttatcccc
tcgacgagtgacaggtaccttctttccgccgattactcccagatcgaactccgtatcgcg
gcggaaatctcacaggacagtcatctcatagacgcattcagaaaccgggaagatattcac
accgcgaccgcgaaaaccatcttcgatacggacgatatcaccaaggatatgagacgaaaa
gccaaggaggttaacttcggtgttctctacggtatccagccatatggactggctcaaagg
ctgaacatatcccaaaaagaggcgaaagcaatcattgacacctatatttcaaagtatccg
ggcctgttcagtgccctgcagacgaccatcacagaagctgcagaaaaaggatatgtcacg
acgctgacaggacgcagacgttacatagagaatcttcgcagcagaaaccggaacatcagg
atggcagcggaacgagcggccatgaacacccctatccagggaactgcggcagatatcatc
aagtgcgctatgggccttgtttctgaagcaataaaaaagaaacggatgcaatccgcaatg
ctcctgcaggttcacgatgaacttgttttcgaaacgacagaagaggaaaaagccgctctc
gccgaaatcgccgagggttgcatgcaaaaagcggcagaactctgcggacttgaaaccgtt
cctgtagaagtcgaaatcggtacaggaaaaaactggctggaagcccactga
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