Chlorobium phaeobacteroides BS1: Cphamn1_0552
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Entry
Cphamn1_0552 CDS
T00709
Name
(GenBank) Polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
cpb
Chlorobium phaeobacteroides BS1
Pathway
cpb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cpb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Cphamn1_0552
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpb03019
]
Cphamn1_0552
03016 Transfer RNA biogenesis [BR:
cpb03016
]
Cphamn1_0552
Enzymes [BR:
cpb01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
Cphamn1_0552
Messenger RNA biogenesis [BR:
cpb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
Cphamn1_0552
Transfer RNA biogenesis [BR:
cpb03016
]
Prokaryotic type
tRNA degradation factors
Cphamn1_0552
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
KH_1
S1
PNPase
KH-I_KHDC4-BBP
OB_RRP5_4th
KH_2
aRib
KH_KhpA-B
DUF7406
KH_5
Motif
Other DBs
NCBI-ProteinID:
ACE03514
UniProt:
B3EMN6
LinkDB
All DBs
Position
complement(584935..587139)
Genome browser
AA seq
734 aa
AA seq
DB search
MFIRKEIDLGDGKVITIETGKMAKQADGATIVRMGDTMVIATVVSSRTPPSPNQDFFPMQ
VEYREKYYAAGKFPGGFIKRESRPSEKEILSARLIDRALRPLFPNGYYQDTQIIISVISS
DQLNDADVLGGIAASAAIMVSDIPFANSMSEVRVGRINGEFVINPTINELAQSDIDISIG
GTNDTICMLEGEMNEISEAEMLEAIRFGHEAIKKICSLQDDIAAEVNKPKRSFLAIDAPD
ELKESIKEACEAPLKELAYMPLAKEERAEKTTAVYKSITEQILGRYKNEITAEDIAADPS
KALYLNEQIISGHIHAIEKQVMRHMILDDAKRLDGRKLEEVRPISIELGLIPRAHGSALF
TRGETQALVVLTLGTKKDAQMIDTLLDDTEKRFMLHYNFPPFSVGETGRVGGVGRREIGH
GNLAERAVKKVVPSESEFPYTIRLVSEILESNGSSSMASVCGATLAAMDGGVPLTKPVSG
IAMGLIKEDDNYAVLSDILGNEDHLGDMDFKVAGTRDGITACQMDIKIDGLDYHILEKAL
EQSKNGRLHILDKMTESIADPRGEIGQYAPKLSTIQVPVDAIGMIIGKGGETIRSITEET
GAQINVDDDGTVTISSPNGESAAAAIETIKTLISKPEVGTIYMGKVKDIREDLGAFVEIL
PRTDGLVHISEIARERVNKVSDHLKQGDRVKVKLIDIRKDQRSGKIRYALSIKALLDMPA
ESANGPSAQEEQNQ
NT seq
2205 nt
NT seq
+upstream
nt +downstream
nt
atgtttataagaaaagagatcgatctgggagacgggaaagtaatcactattgaaaccggc
aagatggcaaagcaggcggacggagccacaatcgtgcgtatgggtgacaccatggtcatt
gctactgtagtatcaagcagaactccaccctctccaaatcaggattttttcccgatgcag
gttgagtatcgtgaaaagtattacgctgcaggaaagttcccgggcggattcatcaaacgc
gaaagcaggccctcggaaaaagagattctttccgcacgccttatcgacagagccctccgt
cctctcttccccaacggctactatcaggatacacagataatcatttcggttatttcgtcc
gatcagctcaacgatgctgacgtgctgggcggaatcgctgcatcagccgcgatcatggtt
tccgacatcccgttcgcaaattcgatgtccgaggtgagggtcggaagaattaacggcgag
tttgtcatcaacccgaccatcaatgaacttgcgcaaagcgacatcgatatcagtatcggg
ggaacaaacgatacgatatgcatgctcgagggtgaaatgaatgaaatatccgaagctgaa
atgctcgaagcgatcagattcggccatgaagcaattaaaaaaatctgctctttacaggac
gatatcgctgccgaggtgaacaaacccaaacgctcttttctcgcaattgacgctcccgat
gagctgaaagaaagcattaaagaagcgtgtgaggctcccctgaaagagctggcctacatg
ccgcttgcaaaagaagaacgtgcggaaaaaaccacggctgtttacaagtccatcactgaa
cagattcttggccgatataaaaacgagataactgcagaagatatcgcggccgatccttca
aaggccctctaccttaatgaacagatcatttcaggtcacatacacgcgattgaaaaacag
gtgatgcgacacatgattctcgatgacgccaaacgccttgacgggaggaaactcgaagag
gtaaggcctatcagcatagagctcggcctgattccgagagcacacggctcggcacttttc
accagaggagaaacacaggcactcgtcgtactgacactcggtacgaaaaaagatgcccag
atgatcgacacgctgctcgacgatactgaaaaacgattcatgctgcactacaatttccct
cccttttcggtaggagaaaccggcagagtcggaggtgtgggccgcagggaaatcggacac
ggcaatcttgcagaaagagccgttaaaaaagtagttccgtccgagtctgaattcccgtat
acgatacgtctcgtctctgaaatccttgaatccaacggctcatcatccatggcctcggtc
tgcggagcaacgcttgcggcaatggatggaggcgtaccgcttaccaagccggtgtcagga
atcgccatgggccttatcaaggaagacgacaactatgcagttctttcggatatactcggc
aacgaggatcatcttggcgacatggacttcaaggttgccggaacgcgggatgggataaca
gcctgtcagatggatatcaagatcgacggtcttgattatcatattcttgaaaaggctctc
gagcagtcaaaaaacggacgtctgcatatacttgataaaatgaccgaatccatcgccgac
ccaagaggtgaaatcggacaatacgctccaaagctctcaaccattcaggttcccgtggac
gctatcggtatgattatcggaaaaggcggtgaaaccatcagaagcattacggaagaaacc
ggagctcagatcaacgtcgacgatgacggcacggtcaccatctcatcaccaaacggcgaa
agcgctgctgctgcgattgaaacgatcaagacgctcatatccaaaccggaagtcggcacg
atatacatgggtaaggtgaaggacatccgtgaggacctgggagcgtttgttgaaattctg
ccaagaacggacggtctggtacatatttctgaaatcgccagggaaagggtgaacaaggta
agcgatcacctgaaacagggtgaccgggtaaaggtaaagctgatcgacatccgtaaagac
cagagatcaggcaagatccgatacgcgctgtccataaaagcattgcttgacatgccggct
gaatctgcaaacggcccgtcggcacaggaggaacaaaaccagtaa
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