Chlorobium phaeobacteroides BS1: Cphamn1_0917
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Entry
Cphamn1_0917 CDS
T00709
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
cpb
Chlorobium phaeobacteroides BS1
Pathway
cpb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cpb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Cphamn1_0917
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpb03019
]
Cphamn1_0917
Enzymes [BR:
cpb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Cphamn1_0917
Messenger RNA biogenesis [BR:
cpb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Cphamn1_0917
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
AAA_19
Cas3-like_C_2
Fe-ADH
EB1
UvrD-helicase
NAT10_TcmA_helicase
Motif
Other DBs
NCBI-ProteinID:
ACE03862
UniProt:
B3EPI4
LinkDB
All DBs
Position
990488..991744
Genome browser
AA seq
418 aa
AA seq
DB search
MGFSSIDLIDPILQALREEGYSSPTPIQAQAIPMILEGRDLLGCAQTGTGKTAAFAIPLL
QLLHARKTNEKKKKIRALVVTPTRELAMQIGDSFSAYGRHTGLTNQVIFGGVNQNPQTAS
LRKGVDIVVATPGRLLDLMNQGHLHLRDVEILVLDEADRMLDMGFIHDIRKILAALPQKK
QSLFFSATMPTEIVRLAGTILKNPAKVSVTPVSSTVDTIRQAVYFVDKGNKNRLLVHLLK
GEEIKTALVFTRTKHGADKVVKFLQKHAVRAEAIHGNKGQGARQRALKNFKEQTTRVLVA
TDIAARGIDVDDLEHVINFDMSNVAETYVHRIGRTGRAGAKGTALSFCDAGEKEYLRDVE
KLIAKKIPDIDHHPFPLTDHNPVKLPLQQGRRNGGRSAEKFSAKSNAKRWSANTRKAR
NT seq
1257 nt
NT seq
+upstream
nt +downstream
nt
atgggattcagttcaatagatctaatcgatccgattttacaagcactgcgtgaggaagga
tactcctcgccgacaccgatacaggctcaggccattccgatgatccttgagggcagggac
ctgctcggctgcgcgcagacgggaacgggaaagaccgcggcattcgctattcctcttctg
caactgctccacgcgcggaaaacaaatgaaaagaaaaagaaaatcagggcgcttgtcgtc
acgccgacgcgggagctcgctatgcagatcggcgacagtttcagtgcctacggccgccat
acgggactgaccaaccaggtgattttcggcggggtcaatcagaacccccagacagcttcg
ctccgcaaaggcgtcgatattgtcgtcgcgacaccgggcaggttgctggacctcatgaat
caggggcatctgcacctgcgtgatgtggaaatacttgtgctcgacgaggcggatcgcatg
ctcgatatggggttcattcacgatatcaggaaaatactggcggcgcttccgcagaagaag
cagtcgcttttcttctctgccaccatgccgacggaaatcgtcaggctggccggcaccatt
ctgaagaaccccgcaaaggtttcagtcacgcctgtttcatccaccgtggacaccatccgg
caagcggtatactttgtcgataaagggaataaaaaccgcctgctcgttcatctgctgaag
ggcgaggagatcaagaccgcgctggtgtttacccgtaccaagcacggggccgacaaggtg
gtcaagtttttgcagaagcatgctgttcgcgctgaagctatccacggcaacaagggacag
ggcgcccgtcaacgggccttgaaaaatttcaaggaacagacgacgagggtgctcgtggcg
accgatatcgccgcacgggggatcgacgtcgacgatctggagcacgtcatcaacttcgat
atgtcgaatgtcgccgaaacatacgttcaccggatcgggcggacgggtcgtgccggggcg
aagggaacggcgctttcgttctgcgatgcgggggagaaagagtacctgcgcgacgtcgag
aaactgatcgcgaaaaaaatccctgacattgatcatcatccctttcctctgacggatcac
aatccggtgaaattgcccttgcagcagggacggagaaacggaggacgttccgcagagaag
ttttccgcaaaatcaaatgcgaaacggtggtcagccaatacaagaaaagccagatag
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integrated database retrieval system
