Chlorobium phaeobacteroides BS1: Cphamn1_1630
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Entry
Cphamn1_1630 CDS
T00709
Name
(GenBank) RNA binding metal dependent phosphohydrolase
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
cpb
Chlorobium phaeobacteroides BS1
Pathway
cpb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cpb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Cphamn1_1630
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpb03019
]
Cphamn1_1630
Messenger RNA biogenesis [BR:
cpb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Cphamn1_1630
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
KH_1
HDOD
KhpA-B_KH
Cas3_HD
FUT8_N_cat
XRN_M
Motif
Other DBs
NCBI-ProteinID:
ACE04550
UniProt:
B3EKC3
LinkDB
All DBs
Position
complement(1757499..1759073)
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AA seq
524 aa
AA seq
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MAIVVNLFLIVLASLLFFVVGFFIGRFFLEKIGTTKVLEAEERAVQIVQEAQKEANEYKD
LKVTEVNQEWKKRRREFDADVTVKNNKFTQLQKQIRQKENNLKRQGQDLRDSEKKVEATR
KELERERESLSNKIKELERITAEQNEKLEVISNLQAEDAKQMLKDNMVAVAREEATETIH
RIHEESEQEASRIAEKTLLTAIQRVSFEQATESALSVVHIQSDELKGRIIGREGRNIKAF
ENATGVDIIVDDTPEVVILSCFDPLRRELAKLTLQKLLIDGVIHPVAIEKAYEDAKKEID
DVLMSTGEETLASLQIPDMPAKVVALIGKMKYHTVYGQNLLQHSREVAMLAGLMAAELKL
DAKYAKRAGLLHDIGLVLPESDEPHAIAGMQYMKKFRESKVVLNAIAAHHGDAPKESPIA
DLVEAANVISSARPGGRGAVTAEGHVKRLENLEEIAKGFPGVIKTYALQAGREIRVIVEG
ENVNDSQADILAHDIAHKIEEVADYPGQIKVSIIREKRSIAYAK
NT seq
1575 nt
NT seq
+upstream
nt +downstream
nt
atggcgattgtggttaacctatttttaatagttcttgcatcgcttcttttttttgtcgtt
ggtttttttatcggacgcttttttcttgagaaaatcggtacgacaaaagttcttgaggct
gaagagcgagccgttcagattgttcaggaggcccagaaagaggctaacgagtacaaagac
ctgaaagttacagaggtcaatcaggagtggaagaagcgccgacgcgaattcgatgcggat
gtgacggtaaagaacaacaagttcactcagttacagaaacagattcgtcagaaggaaaat
aacctgaaacgtcagggtcaggatctcagggatagtgagaaaaaagttgaggcgacgcgt
aaagagctcgagcgggagcgggaatctttatcgaacaaaataaaggaactcgaacggata
acggccgaacagaacgagaagctcgaggtaatcagtaatcttcaggctgaagatgccaag
cagatgttaaaagataatatggttgctgtcgctcgcgaagaagctacggaaaccattcac
agaattcatgaagagtctgagcaggaggcttccagaatagctgaaaaaacattgcttaca
gctatccagcgtgtttctttcgagcaggctacggaaagtgccttgtcagttgttcacatt
caaagtgatgagctgaaaggcaggattatcggtcgtgaaggacgcaacattaaagcattt
gaaaatgcgaccggagttgatatcatcgttgacgatactcctgaggttgtcattctctcc
tgttttgacccattgcgcagagagcttgccaagctgacgctgcaaaaacttctgatagac
ggtgttattcatccggttgcaatcgagaaggcatacgaggatgcaaagaaagagatcgac
gatgttctcatgagcactggagaggagactcttgcttctcttcagattccggatatgccg
gcaaaagttgtcgctttgataggcaaaatgaaatatcataccgtctacggtcagaatctg
ctccagcattcgagagaagtcgcgatgcttgccggtctcatggccgctgaactcaaactc
gacgcgaaatatgccaaacgtgcaggtctgttgcatgatataggcctggtgcttcccgag
agtgacgagcctcatgcgattgccggtatgcagtatatgaagaagttcagggagtcaaaa
gtagtgctcaatgcgattgccgcgcatcatggcgacgcaccaaaggaaagtcccatagca
gatcttgtagaagcagccaacgtgatatcttcagctcgtccgggtggacgtggagctgtt
actgcagaggggcatgtgaagcggctggaaaacctggaagagatagcaaaaggatttccc
ggcgtgatcaagacctatgcgctgcaggcaggaagagagattcgcgttattgttgaaggc
gaaaatgtgaatgattcacaggcagatattctcgcacatgatatcgcacacaaaatagaa
gaggttgctgattatccgggccagatcaaggtgtcgataatcagggaaaaacgatcgatc
gcttacgcgaagtga
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