Chlorobaculum parvum: Cpar_0540
Help
Entry
Cpar_0540 CDS
T00725
Name
(GenBank) Polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
cpc
Chlorobaculum parvum
Pathway
cpc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cpc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Cpar_0540
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpc03019
]
Cpar_0540
03016 Transfer RNA biogenesis [BR:
cpc03016
]
Cpar_0540
Enzymes [BR:
cpc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
Cpar_0540
Messenger RNA biogenesis [BR:
cpc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
Cpar_0540
Transfer RNA biogenesis [BR:
cpc03016
]
Prokaryotic type
tRNA degradation factors
Cpar_0540
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
KH_1
S1
PNPase
KH_2
KhpA-B_KH
Glyco_hydro_20b
Motif
Other DBs
NCBI-ProteinID:
ACF10962
UniProt:
B3QM09
LinkDB
All DBs
Position
complement(578494..580692)
Genome browser
AA seq
732 aa
AA seq
DB search
MFIKKEIDLGQGKVITIETGKMAKQADGSAVVRLNDTMVLATVVSSKTPPPPSQDFFPLQ
VEYREKYSAAGKFPGGFFKREGRPSEKEILSARLIDRALRPLFPDGYYQETQIIISVISS
DTINDADVLGGIAASAAIMVSDIPFANPMSEVRVGRINGQFIVNPDTEELQRSDLDICIG
GTEDTICMLEGEMKEISEAEMLDAIKFGHEAIKKLCAFQKELAAEVAKPKRAFAPTVAPA
ELVAFIEANCAAELKALAYTPLAKEERSDRTKAIYKETIAKTLEHFSSITAEEIAANPEK
ALCQSEHMIDECIHDVEKKVMRHMILDDSKRLDGRTLEQVRPISIELGLIPRAHGSALFT
RGETQALVTLTLGTKKDAQSVDTLTDDKDKRFMLHYNFPPFSVGETGRVGGTGRREIGHG
NLAERAIKMVMPAEQEFPYTVRLVSDILESNGSSSMASVCGGTLAAMDGGIPLKKPVSGI
AMGLIKEGDRYAVLSDILGNEDHLGDMDFKVSGTRDGITACQMDIKIDGLDYHILETALE
QARKGRLHILDVMTEAIPESREDIGKYAPRLTSIQIPVDAIGMVIGKGGETIRSITEETG
AEINIDDDGTVTIACSSPEGTKAAVETIKTLVSKPEVGTIYMGKVRDIRDELGAFVEFLP
KTDGLVHISEIARERIAKVSDVLKPGERVKVKLIDIRKDPRTGKTKFALSIKALLDTDQP
AETNGEAKPARD
NT seq
2199 nt
NT seq
+upstream
nt +downstream
nt
atgtttatcaaaaaagagatcgatcttggacagggtaaggtaatcacgatcgaaaccggt
aaaatggccaaacaggccgacggctcggcagtcgtcaggctcaacgacaccatggtgctc
gccacggtggtttcaagcaaaacacctcccccgccgagtcaggacttcttcccgcttcag
gtcgagtaccgcgagaaatattccgcagccggcaagttccccggcggcttcttcaaacgc
gaaggccgtccttccgaaaaagagattctctccgcccgcctgatcgaccgcgccctgcgc
ccgctcttccctgacggctactatcaggagacccagatcatcatttcggtcatttcgtcc
gacacgatcaacgacgctgacgtgctgggcggcatcgccgcttcggcagccatcatggtg
tcggacattccgttcgcaaacccgatgtcggaagttcgcgtcggtcgcatcaacggccag
ttcatcgtcaatcccgacaccgaagagctgcagcgcagcgacctcgacatctgcatcggc
ggtaccgaggacaccatctgcatgctcgaaggcgagatgaaggagatttccgaagccgag
atgctcgacgccatcaaattcggtcacgaagcaatcaaaaaactttgcgccttccagaag
gagcttgctgccgaggtcgccaaaccgaagcgtgcgtttgcacccaccgtcgctcctgcc
gagctggtcgccttcatcgaggccaactgcgcagccgagctgaaagcgctggcctacacg
ccgctggcaaaagaggagcgctccgacaggaccaaggcgatctacaaggagaccatcgcc
aaaacgctcgaacacttcagctccatcaccgccgaagagattgccgccaatcccgaaaag
gcactctgccagagcgagcacatgatcgacgagtgcatccacgacgtcgaaaagaaggtg
atgcgccacatgattctcgacgacagcaagcgcctcgacggccgtacgctcgaacaggtt
cgcccgatcagcatcgagctgggcctgattccgagggctcacggttcggcgctcttcacc
cgcggcgaaacgcaggcgctggtcacgctcaccctcggcaccaagaaggacgcccagtcg
gtcgatacgctcaccgacgacaaagacaagcgctttatgctgcactacaacttcccgccc
ttctcggtcggtgaaaccggcagggtcggcggcaccggacggcgtgaaatcggccacggc
aacctcgccgaacgcgccatcaagatggtgatgcccgccgagcaggagttcccgtacacc
gtacgcctcgtctcggacattctcgaatcgaacggatcgtcgtcgatggcttcggtctgc
ggcggcacgctggccgcgatggacggcggcattccgctcaagaagccggtctccggcatc
gcgatgggcctcatcaaggagggcgaccgctacgccgtactctccgacattctcggcaac
gaggatcacctcggcgacatggacttcaaggtctccggcacccgtgacggcatcaccgcc
tgccagatggacatcaaaatcgacggcctggattaccacatcctcgaaaccgccctcgaa
caggctcgcaaaggccgtctgcacattctcgacgtcatgaccgaagccattcccgaatcg
cgcgaagatatcggtaaatatgcgccacgccttaccagcatccagattccggtggacgcc
atcggcatggtgatcggcaagggcggcgaaaccatccgcagcatcaccgaagagaccggc
gcagagatcaacatcgacgacgacggcacggtgaccatcgcctgctccagccccgaaggc
accaaagcggcggtcgaaaccatcaagacgctcgtctcgaaaccggaggtcggcacgatc
tacatgggcaaggttcgcgacatccgcgacgagcttggcgccttcgtcgagttcctgccg
aagaccgacggcctggtgcacatctccgaaatcgcgcgcgagcgcatcgccaaggtaagc
gacgtgctcaaacccggcgaacgggtcaaggtcaagctgatcgacatccgcaaggatccg
cgcaccggcaagaccaagttcgccctttcgatcaaggcgctgctcgacaccgaccagcca
gccgaaacgaatggcgaagcaaagccggcacgagactga
DBGET
integrated database retrieval system
