Chlorobaculum parvum: Cpar_0700
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Entry
Cpar_0700 CDS
T00725
Name
(GenBank) RNA binding metal dependent phosphohydrolase
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
cpc
Chlorobaculum parvum
Pathway
cpc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cpc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Cpar_0700
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpc03019
]
Cpar_0700
Messenger RNA biogenesis [BR:
cpc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Cpar_0700
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
KH_1
HDOD
KH_KhpA-B
KH_2
Cas3_HD
KH-I_KHDC4-BBP
Herpes_IE2_3
NPV_P10
Motif
Other DBs
NCBI-ProteinID:
ACF11120
UniProt:
B3QMG7
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All DBs
Position
750810..752384
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AA seq
524 aa
AA seq
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MGIVINLFLIIAASVIFFAVGFYIGRFFLERIGTTKVLEAEERAVQVVQEAQKEANEYKD
LKVNEVNQEWKKRKREFDSEVTIKNNKFAQMQKQIRQKESSLNNQQRDVRETEKKLQEQK
AELKHLTETVQGRSEELEKIIFEQNQRLESISNLTAEEARQMLIDNMVSKAREEATETIH
QIHEEATQKADRAAEKILLTAIQRISFEQATENALSVVHIQSDELKGRIIGREGRNIKAF
ENATGVDIIVDDTPEVVILSCFDPLRREMAKLTLQKLLVDGIIHPVAIEKAYQDAKKEID
DVIMSSGEEVLSSLQIPNMPAELVALIGKMKFHTVYGQNLLLHSREVAMLAGLMAAELKL
DAKQAKRAGLLHDIGLVLPETELPHALAGMEFLRKFNESPVVLNAIGAHHGEVGKESPIA
DLVDAANVISLSRPGARGAVTAEGNVKRLESLEEIAKGFPGVIKTYALQAGREIRVIVEG
DNVSDSQADVLAHDIANKIESEAQYPGQIKVTILREKRSVAFAK
NT seq
1575 nt
NT seq
+upstream
nt +downstream
nt
atggggatcgtaataaatctgtttctcattattgcggcatccgtgatcttttttgcggtc
ggtttctacatcggccggttctttcttgagcgtatcggtactactaaagttctcgaagct
gaggagcgtgccgtgcaggttgttcaggaggcccagaaagaggccaatgaatacaaggat
ctgaaggtcaacgaagtcaaccaggagtggaaaaagcgcaagcgcgagttcgatagcgag
gtgacgatcaagaacaacaagttcgctcagatgcagaagcagattcgccagaaagagtcg
tcgctgaacaaccagcagcgggatgtgcgtgaaactgaaaagaaacttcaggagcagaaa
gccgagctgaaacacctgactgaaacggtgcagggccgctccgaggagcttgaaaagatc
atcttcgaacagaaccagcgcctcgaaagcatttcgaacctgactgccgaagaggcccgt
cagatgctgattgacaacatggtttcgaaggccagggaagaggcgaccgaaaccattcac
cagattcacgaagaggctacgcagaaagctgaccgggctgccgaaaagattctgctgacg
gccattcagcgcatctctttcgagcaggctaccgagaacgctctttcggtggtgcacatc
cagagcgacgagctcaaaggtcgtatcatcggtcgcgaagggcgtaacatcaaggccttt
gagaatgcaaccggcgttgacatcattgttgacgatactccggaagtggttattctttct
tgcttcgatccgctgcgtcgcgaaatggccaagctgaccctgcagaagctgctcgtcgac
ggcatcatccatccggtcgcgatcgagaaggcctatcaggacgccaagaaagagatcgac
gacgtcatcatgtcttccggcgaagaggtgctctcgtcgctgcagattcccaacatgccg
gccgaacttgttgccctgatcggcaagatgaaattccacacggtttatggccagaatctg
ctccttcacagccgcgaagtcgctatgctggcggggctcatggccgccgagctgaagctc
gacgccaagcaggccaagcgtgccggcctgttgcacgacatcggtcttgtgcttcccgaa
accgagctgccgcatgcgctggcaggaatggagttcctcaggaaattcaacgagtcgccg
gtggtgctcaatgcgattggcgctcatcatggtgaagtcggtaaagagtcgcccatcgcc
gatctggtcgatgccgccaacgttatttcgctctcccgccctggtgcgcgtggagccgtg
accgccgaaggcaacgtcaagcgcctcgaaagccttgaagagatcgccaaaggcttcccc
ggcgtcatcaagacctacgctttgcaggctggtcgcgagatccgggtgattgtcgaaggt
gacaacgtcagcgactcgcaggccgatgtgctcgcgcacgacatcgccaacaagatcgag
tccgaagcacagtatcctggccagatcaaggtgaccattcttcgcgaaaaacgctcggtt
gccttcgcgaagtaa
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