Clostridium perfringens 13: CPE0020
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Entry
CPE0020 CDS
T00074
Name
(GenBank) ATP-dependent deoxyribonuclease chain B
KO
K16899
ATP-dependent helicase/nuclease subunit B [EC:
5.6.2.4
3.1.-.-]
Organism
cpe
Clostridium perfringens 13
Brite
KEGG Orthology (KO) [BR:
cpe00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cpe03400
]
CPE0020
Enzymes [BR:
cpe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CPE0020
DNA repair and recombination proteins [BR:
cpe03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
AddAB pathway proteins
CPE0020
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ADDB_N
PDDEXK_1
DUF3502
GP17
Motif
Other DBs
NCBI-ProteinID:
BAB79726
UniProt:
Q8XPE3
LinkDB
All DBs
Position
26116..29592
Genome browser
AA seq
1158 aa
AA seq
DB search
MGLKIIYGRAGTGKSTFCINQIKKKINNSPNNKLILLVPEQFTFQTENKVLSAIGERYVL
NAEVLSFKRLAHNVFNECGGATRTIMGDAGKSMLIFKVLEDLGDNMTVFKNASRQKGFID
IASKTITEFKKYNVNNEVLDLTINEIEDENLKMKMEELKDVFNEFNSRLHEGYVDEEDQL
LLLNEKLDGCSLYDGAEIWIDEFSSFTPNQLSVIGKLLKRAKSVNITLSIDEVNSLKGES
DLFVATKNTEKRLMNLIQEEGIAFSGYINLNEDIPYRFKENKELAHIERQLYAYPFKQYR
GKNNSLRLYRANNNYDEIEFVAKDILRLVREKQYRFKDISVICRDVDNYEKVVSAIFSEY
EIPYYIDKKIDIASNPLIVFINSAVDIISKNWTYESMFKYLKTGLIKEFRGIEGAELIDE
LENYVLAYGIKGKKWMEEWVNYSSSILKEEEISEENKQRLERLNDIRETIVTPLDEFNKQ
CKGKKTLKEFATILYEFLDSKLDIMDTLDKYVDYFKENDMAIEAKEYSEVRDIFIDVLEQ
AVDVLGNEVMDLNEFMKVLNIGLSQYEMGLIPVALDQVNIGDITRIKSRGTKALYIIGVN
DGVLPSASKEEGILSDNDREILLEKGISLASDTRTKIFEEQFLVYTAFTIAEEYLVVTYP
LADFEGKSQRPSIIVHRLKKILPNVKEESEGFKLVDDKYEKISAKIPTLNELMIAIRKNY
DGAEIEDYWKYVYDWYLREPKWKERIEYVRKGLEYTNLENNISKEKAKKLYEDNKNKISL
SVSRLERYAQCPFAYYIQYGLKAKDRKIYEFTAPDLGSFMHEILDEFTNEIKEKDLKWSD
LSKENCRNIINSLVDNQVKNNKSSILNSSKRYSYFTDRFKRILTKSVMVISEQMKRSDFE
IYKNELAFGFSKDVNSIKLDLPSGESFYLNGRIDRVDKLNLDGETYLRIIDYKTGSKKFD
LNKFYNGLQMQLLVYLDALINNSENIVENQAMPGAILYFRIDDPILKSKGDLTEEEIKSE
VLKELKLEGLLLDDVKVVKAMDNTLEPGTHSLIIPANMKKAGDLGKNKALITMEQFELLR
KYVNEKMVEICQNMIEGKIDIEPCKENKNIVCDYCNYSHICQFDSSLEDNRYKVIPKKKD
EDIWKSINEKVGGEVNGD
NT seq
3477 nt
NT seq
+upstream
nt +downstream
nt
atgggcttaaaaattatatatggaagagcaggtactggtaaaagtactttttgtataaat
caaataaaaaagaaaataaataattcacctaacaataaattaattttacttgttccagaa
caatttacttttcagactgagaataaagtgttaagtgctataggagaaaggtatgtttta
aatgctgaggttcttagttttaaaagacttgctcacaatgtttttaatgagtgtggagga
gcaactagaactattatgggggatgctggtaaaagcatgcttatttttaaggtactagaa
gatttaggggataatatgactgtgtttaaaaatgcttctagacaaaagggctttatagac
atagcatcaaaaacaataactgagtttaaaaagtataatgttaataatgaagttttagat
ttaactattaatgaaatagaagatgaaaatctaaaaatgaagatggaagaattaaaggat
gtttttaatgaatttaactcaagacttcatgagggatatgttgatgaagaggatcaactt
ttactattaaatgaaaagttagatggatgttctttatatgatggagctgaaatttggata
gatgagtttagttcctttactccaaatcagttaagtgttataggaaaattattaaaaaga
gctaaaagtgttaacataactttatccatagatgaagtaaattctcttaaaggggaaagc
gatctttttgtagctacaaaaaatacagaaaaaagattaatgaatttaatacaagaagaa
ggaattgcttttagtggatatattaatttaaatgaggatattccctatagattcaaagag
aataaggaattagcacatatagaaaggcaactctatgcatatccttttaaacagtataga
ggaaaaaataatagtttaaggctttatagagcaaataataactatgatgaaatagaattt
gtagctaaggatatattaagacttgttagagagaagcaatacagatttaaggatatttca
gtaatatgcagagatgtagataattatgagaaggttgtatcagctattttttcagagtat
gagattccttattatatagataaaaagatagatatagctagtaatccacttattgttttt
ataaactcagcagtagatataataagcaaaaattggacttatgaaagcatgtttaaatat
cttaaaactggtcttattaaagagtttagagggattgaaggagcagagcttattgatgaa
ctagaaaactatgtattggcctatggaataaagggtaaaaagtggatggaagaatgggtt
aactatagttctagcattttaaaagaagaagagatatcagaggaaaataagcaaagatta
gagagattaaatgatattagagagactatagtaactcctttagatgagtttaataaacag
tgcaaaggaaagaaaaccttaaaggaatttgccacaattttatatgaatttttagattct
aaattagatattatggataccctagataaatatgttgattatttcaaggaaaatgatatg
gctattgaggcaaaggaatattctgaggtaagagatattttcatagatgttttagagcag
gcagttgatgttctaggaaatgaagttatggatttaaatgaatttatgaaggtattaaat
attggattatctcaatatgaaatgggattaattcctgtagccttagatcaagtaaacata
ggagatataaccagaataaaaagtagaggaacaaaggctttatacattataggagtaaat
gatggggtgctcccttcagctagcaaagaagaaggaatattatcagataatgatagagaa
attttacttgaaaaaggaatttcattagcttcagatactagaactaaaatctttgaagaa
caatttttagtttatacagcctttaccatagcagaggaatacttagttgttacttatcct
ttagcagattttgaaggtaaatctcaaagaccttctattatagttcatagacttaaaaag
atacttccaaatgtaaaagaagaaagtgaaggctttaaattagtagatgataagtatgag
aagatttctgctaagattcctactttaaatgagcttatgatagcaattagaaaaaattat
gatggtgctgaaatagaggactattggaaatatgtttatgattggtatttaagagaacct
aagtggaaagaaagaatagagtatgtaagaaagggacttgaatacactaatttagaaaat
aatatttccaaggaaaaggctaaaaagctttatgaagataataaaaataaaatttcacta
agcgtttcaagattagaaagatatgcccagtgtccatttgcttactatatacaatatgga
ttaaaagctaaggacagaaaaatatatgagtttacagcacctgatttaggtagctttatg
catgaaatattagatgagtttaccaatgaaattaaagaaaaagatttaaaatggagtgat
ttaagcaaggaaaattgcagaaacataataaattctttagttgataatcaagttaaaaat
aataagtcatccatattaaatagttcaaagagatattcttattttacagatagatttaag
agaattcttacaaaatcagttatggtaattagtgaacagatgaagagaagtgattttgaa
atttataaaaatgaattggcctttggattttctaaagatgtgaattcaataaaactagac
cttccttcaggagaaagtttttatttaaatggaagaatagatagagttgataaattaaat
ttagatggtgaaacatatttaagaattatagattataaaactggttctaaaaagtttgat
ttaaataaattttataatggacttcaaatgcaacttttagtttacttagatgcccttata
aataattcagaaaatatagttgaaaatcaagctatgccaggggcaatactttattttaga
atagatgaccctatattaaagtctaagggagatttaacagaagaagaaataaaaagtgag
gttttaaaagagttaaaattagaagggcttttactagatgacgtaaaagttgttaaggca
atggataatactttagaacctggaacacactctcttataatacctgcaaatatgaaaaag
gcaggagatttaggaaaaaataaagctttaataaccatggagcagtttgaattattaagg
aagtatgtaaatgaaaaaatggttgagatatgccaaaacatgatagaaggtaaaattgat
atagaaccatgtaaagaaaataaaaatatagtgtgtgattattgcaactactcacatata
tgccagtttgattctagtttagaagacaatagatacaaagttattccaaagaaaaaagat
gaagacatatggaagagtataaatgaaaaagtaggtggtgaagtaaatggggactaa
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