Clostridium perfringens 13: CPE0423
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Entry
CPE0423 CDS
T00074
Name
(GenBank) probable ATP-dependent DNA helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
cpe
Clostridium perfringens 13
Pathway
cpe03420
Nucleotide excision repair
cpe03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cpe00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CPE0423
03430 Mismatch repair
CPE0423
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cpe03400
]
CPE0423
Enzymes [BR:
cpe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CPE0423
DNA repair and recombination proteins [BR:
cpe03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CPE0423
MMR (mismatch excision repair)
Other MMR factors
CPE0423
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD_C
UvrD-helicase
RNase_T
AAA_19
UvrD_C_2
AAA_12
Viral_helicase1
AAA_11
DEDDh_C
PIF1
AAA_30
ResIII
DNApol_Exo
DEAD
Motif
Other DBs
NCBI-ProteinID:
BAB80129
UniProt:
Q8XNB5
LinkDB
All DBs
Position
541903..544515
Genome browser
AA seq
870 aa
AA seq
DB search
MINLNEEQQKVVNEQKNNIILLASAGTGKTNTLAERVTSIIKNGNSKPSEILCITFTNKA
CKEMSDRVMKIVGGEAKDITIRTFHSFCFDVVRTYAKRNTDIFSDFTIFDEDDCREVISK
LSYYYATSNLMATNMQIQKVIDFIKVERARIETLEDRVLDEYKTVIDEIFKFREEKINQV
CTNKGNLNLNLKNYIKFHGHELVTLYDSKLRDDHALDFNDLIILTKELFKDEKVVRALKN
KFNYINIDEVQDTSIIEYSIIEKLFEGNNVLICGDFFQTIYSWRGSDPEMIFNKFKEKYN
PVEIVFSKNYRATKNLNKASLEFLNNAFSSKVSTMYKDGILAESKEDGEKILLKETRGLR
EEARFIFDYVNKLCEKGEDLKRVCVLTRDNNYNIGLSEELYQIGGYEGADFEFILVDQFK
FFRRQEVKDILAFLKLIANRYDSLSLKRIVNRLPTGIGMRTLEAIESYKYKEVGIRLADY
IDPLVLEYGEKFSLLINEFEKENIIVFDVESTGVDVTEDEIIQIAAIKLNKKGEVVDKFE
KFLKNKKPVKDSYYVHGFSDEMLQRIGEDKEKVLKEFVEYSKDSIIVGHNVQYDINILCS
ELERSNLGKPKFKTFYDTLDIYRRFYPGNINYKLENLSKVYDTKHKPSHDAMDDIIATGE
LLVRAINEKIRETSMERMTLMSKHLKAFTAISKKLNELFQIAESKRPYELVACVMNGFNI
KSMYAGDENKEKLNRLRDLYALFRDLDDKSKGNRDALLDIIRITGLSNGELESLIINRTK
KPRIPIITVHQAKGLEFDTVFLAGIQNNTFPSYMSIKEGNLAEEKRVFYVAITRAKKRLV
ITYNSQGKYGHRNEISQFINYIPKEFFKII
NT seq
2613 nt
NT seq
+upstream
nt +downstream
nt
atgattaatttaaatgaagagcaacaaaaggttgtaaatgaacaaaaaaataatattatt
ttgcttgcctctgctggaacaggaaaaactaataccttagcagagagagtcacttccata
ataaaaaatggaaattcaaagccttcagaaattttatgtatcacttttaccaataaggca
tgtaaagagatgagtgatagggtaatgaaaatagttgggggagaggcgaaggatataacc
ataagaacttttcatagtttttgttttgatgtagttagaacttatgcaaagagaaataca
gatattttttcagatttcacaatatttgatgaagatgattgtagagaagttataagtaaa
ttaagttattactatgctacaagcaatttaatggctactaatatgcaaattcaaaaggtt
attgattttataaaggttgagagagcaagaatagaaactttagaggatagagttttagat
gaatataaaactgtaattgatgaaatttttaaatttagagaagaaaaaataaatcaagtt
tgtactaataaaggaaacttaaatttaaaccttaaaaactatattaagtttcatggccat
gaattagtaacactatatgattctaagcttagagatgatcatgctttagactttaatgat
ttaataatacttactaaggaattatttaaggatgaaaaagttgttagggctcttaaaaat
aaatttaattatataaatatagatgaggttcaggatacaagcattatagagtattcaata
attgagaagctttttgagggaaacaatgttcttatatgtggagatttctttcaaaccata
tatagttggcgtggatctgacccagaaatgatttttaataagtttaaagagaagtataat
cctgtagaaattgttttttctaaaaattatagggccaccaaaaatttaaataaggcttcc
ttagaatttttgaacaatgctttttctagtaaagtttctactatgtataaagatggtatt
ttagcagaatcaaaagaagatggtgagaaaatattattaaaggaaactagaggattaaga
gaagaggctaggtttatctttgattatgtaaacaagctatgtgaaaagggtgaagattta
aaaagagtatgtgttcttacaagggataataactataatataggacttagtgaagagctt
tatcaaatcggtggatatgagggagcagattttgagtttatacttgtagatcaatttaag
ttttttaggagacaagaagttaaagatatattagcctttttaaaattaatagctaataga
tatgattctttaagtttaaagagaatagtcaatagacttccaacaggaattggtatgaga
accttagaggctatagaatcttataagtacaaagaggttggtataagattagcagattat
atagatcctcttgtattagaatatggagaaaaattttccctactaataaatgagtttgaa
aaagagaatataatagtttttgatgtggaaagcacaggggttgatgttacagaggatgag
ataattcaaatagcagccataaaattaaataagaagggggaagtagtagataagtttgaa
aagtttctaaagaataagaaaccagttaaggattcctattatgttcatggtttttcagat
gaaatgcttcaaagaattggagaggacaaagaaaaagttttaaaggaatttgtggagtat
tctaaggactccataatagtagggcataatgttcaatatgatataaatatcctgtgtagt
gagcttgaaagaagtaatctaggaaagcctaagtttaaaactttttatgatactttagat
atatatagaagattttatcctggcaatataaattataagctagaaaatctaagtaaagtt
tatgatactaaacataagccaagccatgatgctatggatgatattattgctacaggtgag
cttctagttagggcaataaatgaaaagataagggaaacttcaatggaaagaatgacctta
atgtcaaaacatctaaaagcatttacggctattagtaaaaagttaaatgagctttttcaa
atagcagaaagtaaaagaccttacgaattagttgcctgtgtaatgaatggctttaatatt
aagagtatgtatgctggagatgaaaacaaagaaaagttaaatagattaagagatttatat
gctttatttagagatttagatgataagagtaaagggaatagagatgccttgttagatatt
ataagaataacaggtctttctaatggagagttagaatctttaataataaatagaactaaa
aagcctaggataccaataataactgtgcaccaagcaaagggcttagagtttgatactgta
tttttagcaggtattcagaataatacatttccttcttatatgtctattaaagagggaaat
ttagcggaagaaaaaagagtattttatgtggcaataactcgtgcaaagaaaagattagtc
ataacttataattctcaaggaaaatatggacatagaaatgaaataagccagttcataaat
tatattccaaaggagttctttaaaattatataa
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