Clostridium perfringens 13: CPE1335
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Entry
CPE1335 CDS
T00074
Name
(GenBank) ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
cpe
Clostridium perfringens 13
Pathway
cpe03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cpe00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CPE1335
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpe03019
]
CPE1335
03400 DNA repair and recombination proteins [BR:
cpe03400
]
CPE1335
Enzymes [BR:
cpe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CPE1335
Messenger RNA biogenesis [BR:
cpe03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CPE1335
DNA repair and recombination proteins [BR:
cpe03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
CPE1335
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
IFNGR1_transm
Motif
Other DBs
NCBI-ProteinID:
BAB81041
UniProt:
Q8XKQ9
LinkDB
All DBs
Position
complement(1576633..1578411)
Genome browser
AA seq
592 aa
AA seq
DB search
MRREFEVLNNIFGYREFRKGQQEVIDKILSGKDVFCILPTGGGKSLCYEIPAYIFKGTTL
VISPLISLMKDQVDNLNSLGINAAYISGGNDFKEVKNIIRKFIKGEFKLLYVSPERLENK
YFLDNIEKANIAQIVVDEAHCVSMWGHDFRKSYSKIKPFICNLKKRPIITAFTATATEIV
MKDSIELLGLYNPFIYKGSFSRDNLEINVLKEVDKLEIISEIISEHEEESGIIYCSTKNE
VEELYKHMLYRGKSVGKYHGSLKDKEKNYYQEEFLNDNFKVMIATNAFGMGIDKPDVKFI
IHSTFPKSIENYYQEIGRGGRDGSLAKCYLLYSEQDIRVMDYLISSTTEISRRTIELKKL
EKIIEFCNYDKCLRKYILDYFGEENSIKYCNNCTNCLKNSDLIDMTLEAQKILSCIYRTK
EAFGESVLIDILRGIHGPKIEKYKLYELSTFGIMKEYTSKYIKDIIKELLSIKALERKEG
TYSMLKLNRKSIGILKGEEKVLLEVNNNEESMCMDLELFKKLRILRKDISRREGVKPYIV
FTDSMIMEIINKNPKSKEDLKNIRGFGEQKITKYGPFILTTLRDYEKYGKRN
NT seq
1779 nt
NT seq
+upstream
nt +downstream
nt
atgagaagagagtttgaggtattaaataatatttttggatatagggaatttagaaaaggg
caacaggaggtaatagataagattttaagtggaaaggatgtattttgtatattacctact
ggaggaggaaaatctttatgttatgaaatacctgcttatatttttaaaggaacaacactt
gttatttctccattaatatctcttatgaaggatcaagttgataacttaaattccttagga
attaatgctgcttatataagtggaggaaatgattttaaggaggttaaaaatataattagg
aaattcataaaaggagaatttaagcttctttatgtatcacctgagagattagaaaataaa
tattttttagataatatagaaaaagctaatattgcacaaattgtagttgatgaagcccac
tgcgtatcaatgtggggccatgactttagaaaaagttatagcaagataaaaccatttatt
tgtaatctaaaaaaaagaccaattattacagcctttacagctacggctacagagatagtt
atgaaggattccattgaacttttaggtctttataatccctttatttataagggtagcttt
agtagagataatttggagataaatgtattaaaagaagttgataaattagaaattataagt
gaaattataagtgaacatgaggaagagtcaggaataatttattgctcaactaaaaatgaa
gttgaagaactttataaacatatgctttatagagggaaaagtgtagggaaatatcatgga
tccttaaaagataaggaaaaaaattattaccaagaagagtttttaaatgataattttaag
gttatgattgccacaaatgcttttggtatgggaattgataagcctgatgttaagtttata
atacattcaacatttccaaaaagtatagaaaattattatcaagaaataggccgtggagga
agagatggaagcttagctaagtgttatctcctttattcagagcaagatataagggttatg
gattatttgataagttcaactacagaaatatctagaagaactatagaacttaaaaaacta
gaaaaaataatagagttttgtaattatgataagtgtcttagaaaatatattttagattat
tttggagaggaaaattccataaagtattgcaacaattgtactaactgcttaaaaaatagt
gatttaatagatatgacattagaggcacaaaaaatattatcatgtatatatagaacaaag
gaagcctttggagaaagtgttttaatagatattttaagggggattcatgggccaaagatt
gaaaaatataagctatatgagctttcaacctttggaataatgaaagaatatacaagtaag
tatataaaggacataataaaggagcttttatctattaaggctttagagagaaaagaagga
acatattctatgctaaagttaaatagaaaatctataggaatattaaagggagaagaaaag
gtacttttagaggttaataataatgaagaaagcatgtgcatggatttagaacttttcaag
aagcttcgtattttaagaaaagatatatcaagaagagaaggagtaaaaccatacatagtt
tttacagattcaatgattatggagataataaataaaaatcctaaaagtaaagaggattta
aaaaatattaggggttttggagagcagaaaataacaaagtatggcccttttattcttaca
actttaagagattatgaaaagtatggaaaaagaaattag
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