Clostridium perfringens 13: CPE1396
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Entry
CPE1396 CDS
T00074
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
cpe
Clostridium perfringens 13
Pathway
cpe03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cpe00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CPE1396
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpe03019
]
CPE1396
03009 Ribosome biogenesis [BR:
cpe03009
]
CPE1396
Enzymes [BR:
cpe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CPE1396
Messenger RNA biogenesis [BR:
cpe03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CPE1396
Ribosome biogenesis [BR:
cpe03009
]
Prokaryotic type
rRNA helicases
CPE1396
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
NDK
Motif
Other DBs
NCBI-ProteinID:
BAB81102
UniProt:
Q8XKJ8
LinkDB
All DBs
Position
1647504..1649090
Genome browser
AA seq
528 aa
AA seq
DB search
MNNIKFDDLGLKESLLKAIKDMGFEEPSQIQAESIPVALEGHDIIGQAQTGTGKTAAFGC
AIINNADFSGKKKSPKALILAPTRELAIQVNEELVRLGKHEKLSVLPIYGGQPIDRQIRA
LKNGVDIVVGTPGRVLDLIRRKSLPLNDIGFLVLDEADEMLNMGFIDDLEEIVKSLKTDR
QTLLFSATMPPQIKKLARNYMKEDTKHIAIKKSSLTVSKIEQFYFEIKHRDRFETLCRVL
DFDEPNAAIIFCKTKKGVDEVVEKMQARGYMVEGMHGDMSQNHRLQTLRKFKEGSLDFLV
ATDVAARGIDVESVTHVINYDLPQDNESYVHRIGRTGRANREGVAYSLVTPKEYMMLKQI
QKHTKSKIIRKAVPTVDEIFQNKHNNIINNVKSTIEEASEDFQKFIPIATQLDEDYSLVD
VAAALLKIVFDKESSFDYTSNSIEAPVMDETRLFMSVGRRDGITPKSLVNFLKETARISP
KQVGDIDIKENFCFANVDADAVNNIMKKSMGKKLNKRTVNIEVAKKRK
NT seq
1587 nt
NT seq
+upstream
nt +downstream
nt
atgaacaatataaaatttgatgacttaggtcttaaggaaagcttacttaaagctataaaa
gatatgggatttgaagagccatctcaaatacaagctgaaagtattcctgtagccctagaa
ggacacgatataatcggtcaagctcaaactggtactggtaaaacagctgcttttggatgc
gctataataaataatgctgatttttcaggaaagaagaaatctccaaaagcacttatttta
gcaccaactagagagcttgctatacaagttaatgaagaacttgtaagacttggaaaacat
gaaaaactttctgttttaccaatatacggtggtcaaccaatagatagacaaattagagct
ttaaaaaatggtgttgatatagttgttggaacacctggtagagtattagatttaataaga
agaaagagtttacctcttaacgatataggattcctagtgttagatgaagctgacgaaatg
ttaaacatgggattcattgatgatttagaagaaattgttaaatcattaaaaactgataga
caaacacttttattctctgctactatgcctccgcaaataaagaaattagctagaaattac
atgaaagaagatactaagcacatcgcaataaagaaaagttctttaacagtttcaaaaata
gaacaattttattttgaaataaaacatagagatagatttgaaacactttgtagagtttta
gattttgatgaaccaaatgctgcaataattttctgcaaaacaaaaaaaggtgttgacgaa
gttgtagaaaaaatgcaagctagaggatatatggttgaaggtatgcacggagatatgagc
caaaaccatagacttcaaactttaagaaaattcaaagaaggaagcttagacttcttagtt
gctactgatgttgcagctagaggaatagacgttgaaagcgtaactcacgttataaactac
gatctaccacaagacaatgaaagttatgtacatagaatcggaagaacaggtagagctaac
agagagggagttgcttattctttagttactccaaaagaatatatgatgcttaagcaaata
caaaagcatactaagagtaaaataataagaaaagctgtacctacagttgatgaaatattc
caaaataaacataataacataataaataatgtaaaatctactatagaagaagcttcagaa
gatttccaaaagtttattccaatagctactcaattagatgaagattatagcttagtagat
gttgcagctgctcttttaaaaatagtatttgataaagaatcttcttttgattacacttca
aattctatagaagctcctgtaatggacgaaactagattatttatgtctgttggaagaaga
gatggtataactcctaaatctcttgttaacttcttaaaagagactgctagaataagccct
aagcaagttggagatatagacataaaagaaaacttctgctttgctaacgttgatgctgat
gcagtaaataatataatgaaaaaatcaatgggtaaaaaacttaacaaaagaactgttaat
atagaagttgctaaaaaaagaaaataa
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