Clostridium perfringens 13: CPE2065
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Entry
CPE2065 CDS
T00074
Name
(GenBank) probable single-strand DNA-specific exonuclease
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
cpe
Clostridium perfringens 13
Pathway
cpe03410
Base excision repair
cpe03430
Mismatch repair
cpe03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
cpe00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
CPE2065
03430 Mismatch repair
CPE2065
03440 Homologous recombination
CPE2065
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cpe03400
]
CPE2065
DNA repair and recombination proteins [BR:
cpe03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
CPE2065
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
CPE2065
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CPE2065
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RecJ_OB
DHH
DHHA1
Ribosomal_S7e
Motif
Other DBs
NCBI-ProteinID:
BAB81771
UniProt:
Q8XIQ0
LinkDB
All DBs
Position
complement(2361959..2363737)
Genome browser
AA seq
592 aa
AA seq
DB search
MREQWLLKQRKRDEIENLKEELNIDLLTSILLVNRNIKDEKDAREFLFGGIENLNDPYLM
KDMEKGVKRVKEAIEKGDKITIYGDYDCDGVSSTSILYKGLKRCNANFNYHIPDREDEGY
GMNSKRVKILKEEGTKVILTCDNGIAAFEEIDLAENLGMDVILTDHHDIPLVKDENGEIN
KEIPKAYAVINPKQEDCNYPFKSLCGAGIAFKFICALYKELGIPQKEALELLEICAIATV
CDVVDLLGENRIIVKNGLEMLNNTKNKGLIALKKYTGLEGKEMAQYHLGFVIGPCINATG
RLETADLSVELLLAEDDERADALAKELFELNQRRQELTKDSVDMVIKQIEDNNMENDKVI
LVYNPYIHESIAGIVAGRIKEKYNVPTIIMTKGKDMPKGSARSIEEYNIFEELSKCKELI
SKFGGHPMAAGLSVEEKNIPLLRNMLLENCKLTDYDIIPKVRIDVKLPLESLNYGLVDSL
DKLEPFGKGNSSPLFGEKDVKVSRVWIMGKEQNVIKFRCKLRNSYKTIDAIAFGNKVEEF
KEDFANKYGEEELLRVLDGGNCNFSVDLIYYPNINEFNGNKSIQANVKYFRL
NT seq
1779 nt
NT seq
+upstream
nt +downstream
nt
gtgagagagcagtggctacttaaacaaagaaaaagagatgaaatagaaaatttaaaggaa
gaattaaatatagatttattaacatctattcttttggtgaatagaaatataaaggatgaa
aaagatgcacgtgaatttttatttggtggaattgaaaatttaaatgacccttatcttatg
aaagatatggagaaaggggttaaaagggtaaaagaagccatagaaaagggagataaaata
accatatatggagactatgattgcgacggtgtatcaagcacttcaattctttataaaggg
ctaaaaagatgcaatgctaactttaattatcatattccagatagagaagatgaagggtat
ggtatgaactctaagagggttaaaattttaaaggaagaaggcactaaggtaattttaact
tgcgacaatggaattgcagcctttgaagaaatagatttagctgagaatttaggcatggat
gtaatattaacagatcatcacgatattcctttagttaaagatgaaaatggagagataaat
aaagaaattccaaaggcttatgctgttataaatcctaaacaagaagactgtaattatcca
tttaaatccctatgtggagcaggaattgcctttaaatttatatgtgcattatataaagaa
ctagggattccacagaaggaagctttagaattattagagatttgtgctattgctactgtg
tgtgatgtagttgatctattaggggaaaatagaataatagtaaaaaatggcttagaaatg
cttaataatactaaaaataaaggattaatagccttaaagaaatatacaggtcttgaagga
aaggaaatggcacaatatcacttaggatttgttataggcccttgtataaatgccactgga
agacttgaaacagctgacttatctgttgaattacttttagctgaagatgatgaaagggca
gatgctttagctaaggagctttttgagcttaatcaaagaagacaggaattaactaaagac
agcgttgatatggtaataaagcaaatagaagataataatatggaaaatgacaaggttatt
ttagtttataatccttatatacatgaaagtattgctggaattgtagcagggagaataaaa
gaaaaatataatgttcctacaataataatgactaaaggaaaagatatgcctaagggatct
gcaaggtctatagaagaatataatatttttgaggaattatcaaaatgtaaagagctcata
agcaaatttggaggacatccaatggctgctggtttatctgtagaagaaaaaaacataccc
ttattaagaaatatgttattagaaaactgtaaattaacagattatgatataataccaaag
gttagaatagatgttaaattacctttagaaagtttaaattacggattagtagatagttta
gataagttagaaccctttggaaaaggaaattctagcccgctttttggagagaaagatgtt
aaagtaagcagggtttggataatgggaaaagagcagaatgtaattaaatttagatgtaaa
ttaaggaatagttacaaaaccatagatgccatagcctttggaaataaggttgaggaattt
aaagaagattttgctaataaatatggagaagaggaattattaagagtattagatggtgga
aactgcaactttagcgttgatttaatttattacccaaatataaatgagtttaatgggaat
aaatctattcaagctaatgtaaaatactttagattataa
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