Chaetura pelagica (chimney swift): 104384921
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Entry
104384921 CDS
T08631
Symbol
PRPF8
Name
(RefSeq) pre-mRNA-processing-splicing factor 8
KO
K12856
pre-mRNA-processing factor 8
Organism
cpea
Chaetura pelagica (chimney swift)
Pathway
cpea03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cpea00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
104384921 (PRPF8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cpea03041
]
104384921 (PRPF8)
Spliceosome [BR:
cpea03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
104384921 (PRPF8)
Complex C
U5 SnRNP specific factors
104384921 (PRPF8)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PROCN
PRP8_domainIV
U6-snRNA_bdg
U5_2-snRNA_bdg
PRO8NT
PROCT
RRM_4
JAB
Motif
Other DBs
NCBI-GeneID:
104384921
NCBI-ProteinID:
XP_009991614
LinkDB
All DBs
Position
Unknown
AA seq
2271 aa
AA seq
DB search
MGLDKRELLLGLRREQQSSLPTSCGGALKYMPHAVLKLLENMPMPWEQIRDVPVLYHITG
AISFVNEIPWVIEPVYIAQWGSMWIMMRREKRDRRHFKRMRFPPFDDEEPPLDYADNILD
VEPLEAIQLELDPEEDAPVLDWFYDHQPLKDNRKYVNGSTYQRWQFTLPMMSTLYRLANQ
LLTDLVDDNYFYLFDLKAFFTSKALNMAIPGGPKFEPLVRDINLQDEDWNEFNDINKIII
RQPIRTEYKIAFPYLYNNLPHHVHLTWYHTPNVVFIKTEDPDLPAFYFDPLINPISHRHS
VKSQEPLPDDDEEFELPEFVEPFLKDTPLYTDNTANGIALLWAPRPFNLRSGRTRRALDI
PLVKNWYREHCPAGQPVKVRVSYQKLLKYYVLNALKHRPPKAQKKRYLFRSFKATKFFQS
TKLDWVEVGLQVCRQGYNMLNLLIHRKNLNYLHLDYNFNLKPVKTLTTKERKKSRFGNAF
HLCREVLRLTKLVVDSHVQYRLGNVDAFQLADGLQYIFAHVGQLTGMYRYKYKLMRQIRM
CKDLKHLIYYRFNTGPVGKGPGCGFWAPGWRVWLFFMRGITPLLERWLGNLLARQFEGRH
SKGVAKTVTKQRVESHFDLELRAAVMHDILDMMPEGIKQNKARTILQHLSEAWRCWKANI
PWKVPGLPTPIENMILRYVKAKADWWTNTAHYNRERIRRGATVDKTVCKKNLGRLTRLYL
KAEQERQHNYLKDGPYITAEEAVAVYTTTVHWLESRRFSPIPFPPLSYKHDTKLLILALE
RLKEAYSVKSRLNQSQREELGLIEQAYDNPHEALSRIKRHLLTQRAFKEVGIEFMDLYSH
LVPVYDVEPLEKITDAYLDQYLWYEADKRRLFPPWIKPADTEPPPLLVYKWCQGINNLQD
VWETSEGECNVMLESRFEKMYEKIDLTLLNRLLRLIVDHNIADYMTAKNNVVINYKDMNH
TNSYGIIRGLQFASFIVQYYGLVMDLLVLGLHRASEMAGPPQMPNDFLSFQDIATEVAHP
IRLFCRYIDRIHIFFRFTADEARDLIQRYLTEHPDPNNENIVGYNNKKCWPRDARMRLMK
HDVNLGRAVFWDIKNRLPRSVTTVQWENSFVSVYSKDNPNLLFNMCGFECRILPKCRTSY
EEFTHKDGVWNLQNEVTKERTAQCFLRVDDESMQRFHNRVRQILMASGSTTFTKIVNKWN
TALIGLMTYFREAVVNTQELLDLLVKCENKIQTRIKIGLNSKMPSRFPPVVFYTPKELGG
LGMLSMGHVLIPQSDLRWSKQTDVGITHFRSGMSHEEDQLIPNLYRYIQPWESEFIDSQR
VWAEYALKRQEAIAQNRRLTLEDLEDSWDRGIPRINTLFQKDRHTLAYDKGWRVRTDFKQ
YQVLKQNPFWWTHQRHDGKLWNLNNYRTDMIQALGGVEGILEHTLFKGTYFPTWEGLFWE
KASGFEESMKWKKLTNAQRSGLNQIPNRRFTLWWSPTINRANVYVGFQVQLDLTGIFMHG
KIPTLKISLIQIFRAHLWQKIHESIVMDLCQVFDQELDALEIETVQKETIHPRKSYKMNS
SCADILLFASYKWNVSRPSLLADSKDVMDSTTTQKYWIDIQLRWGDYDSHDIERYARAKF
LDYTTDNMSIYPSPTGVLIAIDLAYNLHSAYGNWFPGSKPLIQQAMAKIMKANPALYVLR
ERIRKGLQLYSSEPTEPYLSSQNYGELFSNQIIWFVDDTNVYRVTIHKTFEGNLTTKPIN
GAIFIFNPRTGQLFLKIIHTSVWAGQKRLGQLAKWKTAEEVAALIRSLPVEEQPKQIIVT
RKGMLDPLEVHLLDFPNIVIKGSELQLPFQACLKVEKFGDLILKATEPQMVLFNLYDDWL
KTISSYTAFSRLILILRALHVNNDRAKVILKPDKTTITEPHHIWPTLTDEEWIKVEVQLK
DLILADYGKKNNVNVASLTQSEIRDIILGMEISAPSQQRQQIAEIEKQTKEQSQLTATQT
RTVNKHGDEIITSTTSNYETQTFSSKTEWRVRAISAANLHLRTNHIYVSSDDIKETGYTY
ILPKNVLKKFICISDLRAQIAGYLYGVSPPDNPQVKEIRCIVMVPQWGTHQTVHLPGQLP
QHEYLKEMEPLGWIHTQPNESPQLSPQDVTTHAKVMADNPSWDGEKTIIITCSFTPGSCT
LTAYKLTPSGYEWGRQNTDKGNNPKGYLPSHYERVQMLLSDRFLGFFMVPAQGSWNYNFM
GVRHDPNMKYELQLANPKEFYHEVHRPSHFLNFALLQEGEVYSADREDLYA
NT seq
6816 nt
NT seq
+upstream
nt +downstream
nt
atggggttggacaagcgggaactgctcctggggctgcggagggagcagcagagcagcctc
cccacctcctgtggaggtgctctgaagtacatgcctcatgcagttctgaagctcttggag
aacatgcccatgccctgggagcagatcagggatgttccagtcctgtaccacatcacgggc
gccatctccttcgtcaacgagatcccctgggtcatagagcctgtgtacattgcccagtgg
gggtcgatgtggattatgatgaggcgagagaagagggatcggcgccacttcaagaggatg
aggttccccccgtttgatgatgaggaaccccctctggattatgctgataacatcctggat
gtggagcctctggaagcaattcagctggagctggatccagaggaggatgcccctgtgctg
gactggttctatgaccaccagccactgaaagacaacaggaagtatgtgaacggctcgacc
taccagcgctggcagttcaccctgcccatgatgtccaccctctaccgcctggccaaccag
ctcctcactgacctggtggatgacaactacttctatttgtttgacctgaaagcctttttc
acctccaaggccctgaacatggctattcctggaggccccaagttcgagcctctggttaga
gacatcaatcttcaggatgaagactggaatgaatttaatgacatcaacaagataatcatc
aggcagcccatcaggacagagtacaaaatcgctttcccctacttgtacaacaacctgccc
caccatgtccacctcacctggtaccacactccaaatgtggttttcattaaaacagaagat
cctgatctcccagctttttatttcgacccgttgatcaaccccatttcacacagacattct
gtcaagagccaggaaccattgcctgatgatgatgaagagtttgagttgccagagtttgtg
gaacctttcctgaaggataccccactctacactgataacacagccaatggcattgccctg
ctctgggccccacggcccttcaacttgaggtctgggaggactagaagggctcttgatatc
cccctggtgaagaactggtaccgcgagcactgcccagccgggcagccggtgaaggtgcgc
gtctcctaccagaagctactgaagtactatgttctgaatgcactcaagcacagacccccc
aaggcccagaagaagaggtacctgttccgctccttcaaggctaccaagttttttcagtcg
acgaagctggactgggtggaagtgggtctgcaggtgtgtcgccagggctacaacatgctg
aacctgctgatccacaggaagaacctgaactacctgcacttggattacaacttcaacctg
aagcccgtgaagaccctcaccaccaaggaaaggaaaaaatcccgttttgggaatgctttc
catctgtgccgggaggttctgcggctgacaaagctggtggtggacagtcacgtgcagtac
aggctgggcaacgtggatgcctttcagctggcagatggtttgcagtacatctttgcccat
gtggggcagctgacaggaatgtaccggtacaagtacaaactgatgaggcagattcggatg
tgcaaggacctgaaacatctcatctactacaggtttaacacagggcctgtgggcaaaggt
cctggctgtggcttctgggctccaggctggagagtgtggctgttcttcatgaggggcatc
accccactgctggaacgctggctggggaatctgctggccaggcagtttgaaggccgtcac
tcgaagggtgtagccaagactgtcaccaagcagcgtgtggagtcccactttgacctggag
ctgagggcagctgtgatgcatgacattctggacatgatgccagaaggaatcaaacagaac
aaggccagaaccatcttgcagcacctgagtgaggcctggcgctgctggaaggccaatatc
ccctggaaggtgccagggctgccaactcctattgagaacatgatcctgaggtacgtgaag
gccaaagctgactggtggacaaacacagctcactacaacagggagcgcatccgccgcggc
gccactgtcgacaaaactgtctgtaagaagaacctgggccgcctgaccaggctctaccta
aaagctgagcaggaacggcagcacaattacttgaaggatgggccctacatcactgcggag
gaggctgtcgctgtgtacacgaccacagtgcactggctggaaagcaggaggttctccccc
attcccttccccccactgtcctacaagcatgacaccaagttgctcatattagccctggag
agactgaaggaagcctacagtgtcaagtctcgcctgaatcagtctcagagagaggagctg
ggcttgattgagcaggcttatgataatcctcatgaagctctgtccaggatcaaacgacac
cttctgactcagagagccttcaaggaggtgggtattgagttcatggatctctacagccac
ttggttcctgtgtatgatgttgagcccttggagaagatcacagatgcttatttggatcag
tacttgtggtatgaggctgataagcgacgacttttccctccgtggatcaaacctgctgac
acagaacctcctccactgctggtgtacaagtggtgccaaggcattaataatctgcaagac
gtttgggaaacaagtgaaggtgaatgcaacgtgatgctggaatctcgatttgagaagatg
tatgagaagattgacctgacattgctcaacaggctcctgcgtctcattgttgaccacaac
attgctgactacatgacagccaagaacaacgtggtgatcaactacaaggacatgaatcac
accaactcctatggcattattcgtgggctgcagtttgcttccttcattgtccagtattat
gggctggtgatggacctgctggtgctgggtctgcaccgtgccagtgaaatggctggacct
ccccagatgccaaatgacttcctcagcttccaggacatcgccaccgaggtggcccatccc
atccgcctcttctgcagatacatcgaccgcatccacatcttcttcaggtttacagcagat
gaggcaagagacttgattcagcgctacctgacagagcacccagaccccaacaacgagaac
attgtgggctacaacaacaagaagtgttggccccgggatgctcggatgcgcctcatgaaa
cacgacgtgaaccttggccgtgctgtgttctgggacatcaagaaccggttgccccggtcg
gtcaccacggtgcagtgggagaacagcttcgtgtctgtgtacagcaaggacaaccccaac
ctgctcttcaacatgtgtggcttcgagtgccgcatcttgcccaagtgccgcaccagctac
gaggagttcacccacaaggatggtgtctggaacctgcagaatgaggtcaccaaggagcgc
acggctcagtgcttcctgcgagtggatgatgagtctatgcagaggtttcacaacagagtg
aggcagatcctcatggcatcaggctccacaaccttcactaagattgtcaataaatggaat
acagctctgattggcttgatgacgtatttccgggaggctgttgtaaacactcaggagctg
cttgatttgctggtgaagtgtgagaataaaatccagactcgaatcaagattggtctgaac
tccaaaatgcccagccgttttccaccggtggtcttttacacccctaaagagctggggggg
cttggcatgctctctatgggccacgtcctcatcccacagtctgacctgaggtggtccaag
cagacagatgttggcatcactcacttccgctcaggaatgagtcatgaggaggaccagctc
atcccaaatttgtatcgctacatccagccatgggaaagtgaattcattgactcccagagg
gtgtgggcagagtatgccctgaagagacaggaggccatagcccagaacaggcgtctgacg
ctggaggatctggaggactcatgggacaggggaattcctcgtattaacacccttttccag
aaggaccggcacaccttggcttatgataaaggatggagggtcaggactgacttcaaacag
taccaggtcctgaagcagaaccccttctggtggacacatcagcgccacgatggcaaactc
tggaacctgaacaactaccgcacagatatgatccaggcacttggtggagtggaagggatc
ctggagcacactctcttcaagggcacctacttccccacttgggagggtctgttctgggag
aaggccagtggctttgaggagtccatgaagtggaagaagctgacgaatgcccagagatcg
ggtttgaaccaaattccaaacagaagattcaccctgtggtggtctcctaccatcaacaga
gccaatgtgtacgtggggtttcaggtgcagctggatttgacaggcatcttcatgcatggc
aagatccccacgctgaagatctccctcatccagattttccgagctcacttgtggcagaag
atccatgagagcattgtcatggatctgtgtcaggtgtttgatcaagagctggatgctctg
gagattgagacagtgcagaaggagacaatccatcccaggaagtcatacaagatgaattcc
tcctgtgcagatatccttctttttgcttcctacaagtggaacgtgtcacgtccatcactg
ctcgcagattccaaggatgtgatggatagcaccaccactcagaagtactggatagacatc
cagctgcgctggggagattacgactcccacgacatcgagcgctacgccagagccaagttc
ctggactacactacagacaacatgagcatctatccctctcccactggtgtgctcattgcc
attgatctggcctataacttgcacagtgcttatgggaactggttccctgggagcaaacct
ctgatccagcaggccatggccaaaatcatgaaagcaaatcctgctctgtacgtgttgagg
gaacggatccgcaaggggctgcagctgtactcctctgagcccacagagccctacctctcc
tcccagaactatggagagctcttctccaaccagatcatctggtttgtggacgacaccaac
gtgtacagagtgaccattcacaagacttttgaagggaatttgaccacaaaacccatcaac
ggagccattttcatcttcaatcccagaactgggcagctcttcctgaagatcattcataca
tctgtgtgggcaggacagaagcgtctaggacagctggccaagtggaagactgctgaagaa
gtggctgccttgatccggtcacttcctgtggaggagcagcccaagcagatcatagtgaca
cggaagggcatgttggacccacttgaggtgcacttgctggatttccccaacattgtgatc
aaaggctccgagttgcagctgcccttccaggcctgcctgaaagtagagaagtttggtgac
ctcatcctgaaggccactgaaccccagatggttctcttcaacctctatgatgactggctg
aaaaccatctcttcctacacggccttctcccgtctgatcctgattctccgggcgctgcac
gtcaacaacgatcgagccaaagttattctgaaaccagacaagacaaccataacagagccc
caccacatctggccaaccctgacagatgaggagtggatcaaggtggaggtgcagctgaag
gatctcatccttgctgactatggcaagaagaacaatgtgaatgtggcatccctgacccag
tcagagatccgagacattatcctgggcatggagatctctgccccctcccagcagaggcag
cagattgcagagattgagaagcagaccaaggagcagtcgcagctgacggccacgcagacc
cgcacggtcaacaagcacggggatgaaatcatcacctccaccaccagcaactatgaaacc
cagaccttctcctccaagaccgagtggcgagtcagagccatctcagctgccaacctccac
ctgcggacaaaccacatctacgtttcatcagatgatatcaaggaaacaggctacacctac
attctgcccaagaatgtgttgaagaaattcatctgcatctcagatcttcgggcccagatt
gcaggttacctgtatggagtgagcccccctgacaacccccaggtgaaggagatccggtgc
attgtaatggtgccccagtggggaacacaccagactgtccatctccctgggcagctgcca
cagcatgagtatctcaaggaaatggaaccactggggtggattcacacccaacccaacgag
tcccctcagctctcaccacaggatgtcaccacccatgccaaggtcatggctgacaacccc
tcctgggatggggagaagaccatcatcatcacctgcagcttcacccctggctcctgcacc
ctgactgcctacaaactgacccccagtggctacgagtggggcaggcagaacacggacaag
ggcaacaaccccaaggggtacctgccatcccactacgagagggtgcagatgctgctgtct
gatcgtttccttggcttcttcatggtcccagcacaagggtcctggaactacaacttcatg
ggcgttcgccacgaccccaacatgaagtacgagctgcaactcgccaaccccaaggagttt
tatcacgaggtccatcgcccttctcacttcctcaacttcgccctgctgcaggagggggag
gtctactccgccgacagggaggacctctacgcctag
DBGET
integrated database retrieval system
