Chaetura pelagica (chimney swift): 104385121
Help
Entry
104385121 CDS
T08631
Symbol
VPS8
Name
(RefSeq) vacuolar protein sorting-associated protein 8 homolog
KO
K20178
vacuolar protein sorting-associated protein 8
Organism
cpea
Chaetura pelagica (chimney swift)
Pathway
cpea04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
cpea00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
104385121 (VPS8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cpea04131
]
104385121 (VPS8)
Membrane trafficking [BR:
cpea04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
104385121 (VPS8)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_VPS8
TPR_Vps8
zf_RING_Vps8
VPS8_N
TPR_VPS8_2
Beta-prop_WDR36-Utp21_1st
zf-RING_Vps41
WD40_CDC20-Fz
Clathrin
zf-RING_11
zf_RING_Vps8_fungal
TPR_Vps41
zf-RING_2
Beta-prop_EML_2
Beta-prop_WDR5
zf-RING_UBOX
Beta-prop_HPS5
WDR55
Beta-prop_WDR3_1st
ANAPC4_WD40
Motif
Other DBs
NCBI-GeneID:
104385121
NCBI-ProteinID:
XP_009991835
LinkDB
All DBs
Position
Unknown
AA seq
1362 aa
AA seq
DB search
MLKSMNWIDDKEFDIPQVDTPPTLESILNETDDEEESFILEDPFLLNVDNTDAHSYDTSS
VASSDSGDRTHLKRKKKLPDSLSLHGSVIRLSLLKGISAQIVSAADKVDAGLPTAIAASN
LIAVGTSHGLALIFGKDQNQALRLCLGSTAVGAQYGAISALSINNDCSRLLCGFAKGQIT
MWDLASGKLLRSITDAHPPGTAILHIKFTDDPTLAICNDSGGSVFELSFKRVMGVRTCES
RCLFSGSKGEVCCIEPLHAKVELRDHPITQYSLLAMASLTKILVIGLKPSLKVWMTFPYG
RMDPASVPLLAWHFVAVQNSVNPMLAFCRGDVVHFLLVKRDDSGAIHVTKQRQLHLHYDL
INFTWINSRTAVLLDSVEKLHVIDRQTQEELETIEISEVQLVYNSSHFKSLATGGNVSEA
LALVGEKACYQSISSCGGQVFYLGTKSVHIMTLRSWRERVDHLLKQECLTDALALAWSFY
EGKAKAVVGLSGDTSRRKAVIADRMVEILLHYADRTLKKCPDQGKIQVMEQHFQDVVPVI
VDYCLLLQRTDLLFNQIYDKMSENSVAKGIFLECLEPYILSDKLMGITAQVMKDLLLHFQ
DRNRLENLEACIVHMDITSLDIQQVVLLCWENHLYDAMIYVYNSGMNDFISPMEKLFKVI
APPLNAGKSLTDEQVIMGNKLLVYISCCLAGRAYPLGDIPEDLVPLVKNQVFEFLIRLHS
AEGSVEEEVYPHVRTLLHFDTREFLNVLALTFEDIKNDKQAVEYQQRIVDILLKVMVENS
DFTPSQVGCLFTFLARQLAKPNNTLFVNRTLFDQVLEFLCSPDDDSRHSERQQVLLELLQ
AGGIVQFEETRLIQMAEKAEFYQICEFMYERELRYDKIIGCYLRDPVRKEEVFNYIHNIL
SMPGYSAEEKQLVWQKALEHIEELLLLSPCKAADLVAIHFSEQMETIIANLQDQFLLFQF
LRSLLDPREGINQDLIHLPPYITEQFIELLCQYSPEQVLDTLKVLEYCRLEETIQITQKH
QLHEASSYLLEKKGDIHGAFLVMLEWLQSKLLMLTQDDESTAELPLLENIEDTLMKTIAL
CQRNSHNLDQQQREALWFPLLEAMMSPQKVSGSSQGRYSESLKSLTMQVLNNMAAFIALP
SILQRILQDPVYGKGKLGEIQGLVLGMLDTFNYEQTLLETTTNLLNHDLHWSLCNLRASV
TRGLTPKQDYCCICLQQYKRRQETADEIIVFSCGHLYHSLCLLSKECGTVTKGLMRWMCY
KCNSSNKGGKLSENLAELKKGSGASLAQTGSESLDPQQIQAFDQLCRLNRGTSRLALLTE
LSRGHGEKHGLLSVSHGDPATSSVFQNETFQLHLAPPPLAED
NT seq
4089 nt
NT seq
+upstream
nt +downstream
nt
atgctcaaatccatgaactggattgatgacaaagagtttgacattcctcaagttgatacc
cctccaacactggagagcatcttgaatgagactgatgatgaagaagagtctttcattctg
gaggatccctttctcctgaacgtggataacacagatgcacactcctatgacacatcttcc
gtagccagctctgacagcggggaccgaacacacctgaaaaggaagaaaaaactccctgat
tctctctccctgcatggatcagtgatacggctttcccttctgaaaggaatttcagcccaa
atagtgtctgcagcagacaaagtggatgctggcttgcccactgcaattgcagcgtcaaat
ctgatagcagtggggacttcccatgggttagcactgatttttggaaaagatcagaaccag
gctctccggctgtgtctgggcagcactgcagtcggggcccagtacggagccatctctgct
ctcagcatcaacaatgactgttccaggctgctgtgtggctttgcaaaaggacagatcacc
atgtgggatctggccagtgggaagctgctgcgctccataacagatgcccacccaccagga
acagccattttgcacatcaagtttacagatgacccgacgcttgcgatttgcaatgacagc
ggaggctccgtctttgaactgtcatttaagagggttatgggtgtgagaacatgtgaatct
cgatgtctcttcagcggctcgaagggggaggtttgttgcattgaacccttgcatgcaaaa
gttgagctgagagaccatcccatcacccagtattctctgctggccatggcttctctgaca
aagatactggtgattggcctgaagccctctctgaaagtgtggatgacctttccttatggt
cgtatggaccctgctagtgtccctcttctggcctggcactttgtggctgtacagaactca
gtgaaccccatgctggcattttgtcgaggagatgttgttcattttcttctggtgaagcga
gatgacagtggtgccatacacgtcacgaagcaaaggcagctgcatctacactatgacctc
atcaactttacttggataaactcaaggacagcagtgcttctggacagtgtggagaagctg
cacgtgatagatcgtcagacacaggaggagctggagaccatagagatctcagaagttcag
ctggtctacaacagcagccacttcaagtccctggccacaggaggcaatgtcagcgaagct
ctggcattggttggagagaaggcttgttatcagtccatcagcagctgtggtggtcaggtc
ttctaccttggaactaagtctgtgcacatcatgacactgaggagctggagagagagggtt
gaccaccttctgaaacaagaatgtctcactgatgccctggctctagcttggtctttttat
gaaggtaaagcaaaggctgtagtaggcctgtctggggacacaagcaggaggaaggcagtc
attgcagacagaatggttgaaatcctgctccattacgctgatcgcactttgaagaagtgt
cctgaccaaggaaaaatccaggtcatggagcaacattttcaggacgtggtgcctgtcata
gtggattattgcctcttgctgcagcgcacggatctgttatttaaccagatatatgataag
atgagtgagaattcagtagctaagggcatctttctggagtgcttggagccatatatctta
agtgataagctgatgggaatcacagctcaagtgatgaaagacttgctgcttcacttccaa
gacaggaacaggttggaaaacttggaagcctgcattgtgcatatggatatcaccagctta
gacatacagcaggtggttcttctgtgctgggaaaaccacctctatgatgccatgatctac
gtctacaacagtgggatgaatgacttcatcagtcccatggagaagctgttcaaagtcatt
gctcctccactgaatgctgggaagtctctcacagatgagcaggtgataatgggcaacaag
ctgcttgtatatataagctgctgcttggcaggccgtgcatatccattgggtgatattcct
gaagatctggtacctttggttaaaaatcaggtgtttgagttcctgatccggctgcactcg
gctgagggctccgtggaggaggaggtctatccccatgtccgcaccctgctgcacttcgac
actcgggagttcctcaatgtgcttgctctgacttttgaagacatcaagaatgacaagcaa
gctgtggaataccaacagagaattgtggacatacttctgaaagtcatggtagagaattct
gacttcaccccatcccaggttggctgtctcttcaccttccttgcccgccagcttgccaag
cccaacaacacattgtttgtgaacaggacactttttgaccaggtcctagaattcctgtgc
agtccagacgacgactcccggcattccgagaggcagcaggtcctgctggaattgctgcag
gcaggaggaatagtgcagtttgaagagactcgtctcatccaaatggcagagaaagcagaa
ttctaccagatttgtgagttcatgtatgaacgagagcttcgctacgacaaaatcattggc
tgttacctgcgggacccagtgagaaaggaagaagttttcaactatattcacaacatccta
tccatgcctggctacagtgctgaagaaaagcagttggtgtggcagaaagctctggaacat
atagaggagctgctgttgctgagtccctgcaaagcagctgacctggtggccattcacttc
agtgagcagatggagaccatcattgcaaacctgcaggaccagttcttactcttccagttc
ctgaggagtctccttgacccaagagaaggcattaaccaagacctgatacacttaccaccc
tacatcactgagcagttcatcgagctgctctgtcagtacagcccagagcaggttttggac
acactgaaggttctggaatactgcaggctggaagaaaccatccagataacccagaagcat
cagctccatgaagcttcttcatatttactggagaagaagggagatatccatggtgccttc
ttggtgatgcttgagtggttgcagagcaagttgctgatgcttacacaggatgatgaaagc
acagctgaactccccttgctagaaaacattgaagataccttaatgaaaacaattgccctt
tgccagagaaattcacacaatttagaccagcagcagcgagaggccctctggtttcccctc
ctggaggccatgatgtccccacagaaagtgtctggttcttcacagggtcgatactcggaa
tctttgaagagtttgacaatgcaagtgctgaataacatggctgcatttattgctcttcct
tccatcctgcagagaattctccaggacccagtttatggaaaagggaaacttggagaaatt
caaggccttgtcctgggaatgctcgacacttttaactatgagcaaacccttttagagaca
actacaaatcttttaaaccatgatctccactggtccctgtgtaacctaagagcttctgtc
actagagggcttaccccaaagcaggattactgctgcatctgtctccagcagtacaaaaga
aggcaagaaactgctgatgaaataattgttttcagctgtggccacttgtaccactccctg
tgtctgctgagtaaggagtgtggcactgtcaccaagggcctgatgaggtggatgtgctat
aaatgcaactcgagtaacaagggaggaaaactgagcgagaacttggcagagctaaaaaaa
ggaagtggagcctccttggcacagacaggttcagagtctctggatcctcagcaaatccag
gcttttgaccagctctgccgactgaaccgaggaacctccaggctggctctcctgacagaa
ctgtctcgtggccacggtgagaagcacgggctgctcagtgtttcccacggggacccagcc
accagcagtgtcttccagaacgagaccttccagctccatctggccccccctccactggca
gaagactaa
DBGET
integrated database retrieval system
