Chaetura pelagica (chimney swift): 104385601
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Entry
104385601 CDS
T08631
Symbol
SCN8A
Name
(RefSeq) sodium channel protein type 8 subunit alpha isoform X1
KO
K04840
voltage-gated sodium channel type VIII alpha
Organism
cpea
Chaetura pelagica (chimney swift)
Pathway
cpea04517
IgSF CAM signaling
Brite
KEGG Orthology (KO) [BR:
cpea00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04517 IgSF CAM signaling
104385601 (SCN8A)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
cpea04040
]
104385601 (SCN8A)
Ion channels [BR:
cpea04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
104385601 (SCN8A)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ion_trans
Na_trans_assoc
Na_trans_cytopl
PKD_channel
IQ_SCN5A_C
GPHH
IQ
ATP-synt_B
FUT8_N_cat
SieB
Motif
Other DBs
NCBI-GeneID:
104385601
NCBI-ProteinID:
XP_009992375
LinkDB
All DBs
Position
Unknown
AA seq
1987 aa
AA seq
DB search
MAARLLAPPGPDSFKPFTPESLANIEKHIAELKRKQKQKPKQDSSHRDDDEDSKPKPNSD
LEAGKNLPFIYGDIPKGLVAVPLEDFDPYYMTQKTFVVLNRGKTLFRFSATPALYILSPF
NLFRRIAIKILIHSVFSMIIMCTILTNCVFMTFSNPPEWSKNVEYTFTGIYTFESLVKII
ARGFCIDGFTFLRDPWNWLDFSVIMMAYVTEFVDLGNVSALRTFRVLRALKTISVIPGLK
TIVGALIQSVKKLSDVMILTVFCLSVFALIGLQLFMGNLRNKCVIWPINMNETFLDNGSR
GFDWEEYTNNMSNFYIIPGAPDPLLCGNSSDAGQCPEGYTCMKAGRNPNYGYTSFDTFSW
AFLALFRLMTQDFWENLYQLTLRAAGKTYMIFFVLVIFVGSFYLVNLILAVVAMAYEEQN
QATLEEAEQKEAEFKAMLEQLKKQQEEVQTAGMVTSAGTVSEDAVEDDGGGRMSRSSSEI
SKLSSKSAKERRNRRKKRKDKELSEGDEKCDTEKVFKSESEDGMRRKAFRLPDNRLGRKF
SIMNQSLLSIPGSPFLSRHNSKSSIFSYKGRFRDPGSENEFADDEHSTVEESEGRRDSLF
IPIRGRDRRSGYSGYTRLRPDTPIFPTLRRSLKRNSTVDCNGVVSLIGGPPSSMPGGRLL
PEVRPGSGRGDSGTTEIEIRKKPGGSLLVSMDQVNASYGRKDRTNSVMTGLTNTLVEELE
ESQRKCPPCWYKFANTFLIWECHPYWIKLKEIVNLIVMDPFVDLAITICIVLNTLFMAME
HHPMTPEFEHVLSVGNLVFTGIFTAEMFLKLIAMDPYYYFQEGWNIFDGFIVSLSLMELS
LADVEGLSVLRSFRLLRVFKLAKSWPTLNMLIKIIGNSVGALGNLTLVLAIIVFIFAVVG
MQLFGKSYKECVCKINPECELPRWHMHDFFHSFLIVFRVLCGEWIETMWDCMEVAGQAMC
LIVFMMVMVIGNLVVLNLFLALLLSSFSADNLAATDDDGEMNNLQISVIRIKKGIAWTKA
KVREFMQAHFKQREADEVKPLDELYDKKVNCIANHTGADINRDIDYQKNGNGTTSGIGSS
VEKYIIDEDHMSFINNPNLTVRVPIAVGESDFENLNTEDFSSDTDPDGSKEKLDDTSSSE
GSTIDIKPEVEEVPVEAPEEYLDPDACFTEGCVQRCKCCQVNIEEGLGKSWWTLRKTCFL
IVEHNWFETFIIFMILLSSGALAFEDIYIEQKKTIRTILEYADKVFTYIFILEMLLKWCA
YGFVKFFTNAWCWLDFLIVAVSLVSLIANALGYSELGAIKSLRTLRALRPLRALSRFEGM
RVVVNALVGAIPSIMNVLLVCLIFWLIFSIMGVNLFAGKYHYCFNETAEERFEIDIVNNK
TDCEALMPPNSTEIRWKNVKINFDNVGAGYLALLQVATFKGWMDIMYAAVDSRKQEEQPK
YEDNIYMYIYFVIFIIFGSFFTLNLFIGVIIDNFNQQKKKFGGQDIFMTEEQKKYYNAMK
KLGSKKPQKPIPRPLNRIQGAVFDFVTQQAFDIVIMMLICLNMVTMMVETDTQSKKMEDI
LYWINFVFVIFFTCECVLKMFALRHYYFTIGWNIFDFVVVILSIVGMFLAEIIEKYFVSP
TLFRVIRLARIGRILRLIKGAKGIRTLLFALMMSLPALFNIGLLLFLVMFIFSIFGMSNF
AYVKHEAGIDDMFNFETFGNSMICLFQITTSAGWDGLLLPILNRPPDCDLEKEHPGSGFK
GDCGNPSVGIFFFVSYIIISFLIVVNMYIAIILENFSVATEESADPLSEDDFETFYEIWE
KFDPDATQFIEYSKLADFADALEHPLRVPKPNTIELIAMDLPMVSGDRIHCLDILFAFTK
RVLGDSGELDILRQQMEERFVASNPSKVSYEPITTTLRRKQEEVSAVVIQRAYRARLARR
GFISRRPVATKLENGGANREKKEGTPSTASLPSYDSVTKPEKEKQQRAEEGKRERAKRQK
EVRESKC
NT seq
5964 nt
NT seq
+upstream
nt +downstream
nt
atggcagcgcggctgctcgcaccaccaggccctgatagttttaaacccttcactccggag
tctctggccaacattgagaaacacattgcagagctgaaaaggaagcagaagcaaaagcca
aagcaagacagcagccaccgggacgacgatgaagacagcaaaccaaaaccaaacagtgac
cttgaggcagggaagaatttgcctttcatctacggggacatcccaaaaggcctggttgct
gttccactggaggactttgacccttattacatgacccagaaaacctttgtagtactaaac
agagggaaaacactcttccgatttagtgccacacctgccttgtacattttaagtcctttt
aatctgtttagaagaatagctattaaaattttgatacattcagtatttagcatgatcatt
atgtgcactattttgaccaactgtgtattcatgacttttagtaacccacccgaatggtcg
aagaatgtggagtacaccttcactggcatttacacatttgaatccctggtgaaaatcatt
gcaagaggtttttgcatagatggcttcactttcctgcgggatccctggaactggttggat
ttcagcgtcatcatgatggcatatgtcacagagtttgtggaccttgggaatgtctcagca
ttgagaactttcagagttctccgagctttgaaaactatctctgtcattccaggcttgaag
accattgtgggggctctaattcagtctgtgaagaagctgtcagatgtcatgatcttgaca
gtgttttgtctcagtgtctttgctctgattgggctgcaactgttcatgggcaatttgagg
aacaagtgtgtgatttggccaattaacatgaacgagactttcctggacaacggctcgagg
ggctttgactgggaggaatacaccaacaatatgtcaaatttttacatcattcctggtgcc
cctgatcctttgctctgtggtaacagctccgatgcaggtcaatgtccagagggctacacg
tgcatgaaggcaggacggaaccccaactatggttacacaagctttgacaccttcagctgg
gcctttctggctttatttcgccttatgactcaggacttttgggaaaacttgtatcaatta
accttacgagcagcaggaaaaacctacatgatcttctttgtcttagtgatctttgtggga
tcattttatctggttaatctcattttggctgtggtagccatggcttatgaagagcagaac
caggccaccctggaggaggcagagcagaaggaggcagaatttaaggccatgttagaacaa
ttgaaaaagcagcaggaagaagtacagactgctggcatggtcacctcggcagggacagtc
tctgaagatgctgtggaagatgatggagggggaaggatgtctcggagctcctcagagatc
tccaaactcagctccaagagtgccaaggagcggcggaaccgcaggaagaaacggaaggac
aaggaactgtcggaaggagacgagaagtgtgacactgagaaggtgttcaagtctgagtct
gaggatggcatgaggaggaaggcattccggctgccagacaacaggctggggaggaagttt
tccatcatgaaccagtctctcctcagcatcccaggctcccctttcctctcccgccacaac
agcaagagcagcatcttcagctacaaagggcgattccgggacccgggctcagagaacgag
tttgcagacgacgagcacagcacggtggaggagagtgagggcaggagagattccctcttc
atccccatccggggccgcgaccggcgcagcggctacagcggctacacccggctcagaccc
gacacgccgatcttccccaccctgcgccgcagcctcaagaggaacagcaccgtggattgt
aacggggtggtgtccctgatcggggggcccccctccagcatgcccggggggcgcctcctg
cccgaggtgaggccggggtcgggaaggggtgattctggcacaacagaaattgaaattagg
aagaaacctggtgggtctctcctggtctccatggatcaagtgaacgcgtcctacgggaga
aaggaccgaaccaacagcgtgatgaccgggctgaccaacaccctggttgaggagctggaa
gagtcccagaggaagtgtcccccttgctggtacaagtttgccaacacattcttgatctgg
gaatgccacccgtactggatcaagctgaaggagattgtgaacttaattgtcatggatcct
tttgttgacttggccatcaccatctgcatcgtgctgaacaccttgttcatggccatggag
caccaccccatgaccccagagtttgaacacgtgctctctgtgggaaacctggtgttcact
ggaattttcacagcagaaatgttcctgaagctcattgccatggatccctactattatttc
caagaaggctggaacatctttgatgggtttattgtctccctgagtttgatggaactgagt
ctggcagatgtggaaggactttctgtgctgagatctttccgactgctgagagtcttcaaa
ctggccaagtcctggcccactctgaacatgctgataaaaatcatcggaaactcagtgggt
gctctggggaacttgaccttggtgctggccatcatcgtgttcatctttgctgtggtgggg
atgcagctctttggcaaaagctacaaggagtgtgtctgcaagatcaatccggagtgtgag
ctgccccgctggcacatgcacgatttcttccactccttccttattgtcttccgtgtgttg
tgtggggaatggattgagaccatgtgggattgtatggaagtggcaggacaggccatgtgc
ttgattgtcttcatgatggtcatggtcatcggaaatttggtggtgctgaacctgttcctg
gccttgctgctgagctccttcagcgccgacaacttggcggccacggacgacgacggggag
atgaacaacctgcagatctcggtgatccgcatcaagaagggcatcgcctggaccaaggcc
aaggtgagggagttcatgcaggcccactttaagcagagggaggcagacgaggtcaagccc
ttggacgagctgtatgacaagaaggtgaactgcatcgccaaccacaccggggccgacatc
aacagggacattgattatcagaagaacggcaacggcaccacgagcggcatcggcagcagc
gtggagaagtacatcatagatgaagaccacatgtccttcatcaacaaccccaacctcact
gtccgggtgcctattgctgtgggggagtcagattttgagaacctcaacacggaagatttc
agcagtgacacagaccccgatggcagcaaagagaaacttgatgataccagctcctctgaa
ggcagcaccattgatataaagcctgaagtggaagaagtccctgtggaggcaccagaggag
tatctggacccagatgcctgcttcacagaaggttgtgtgcagcgctgcaagtgttgccag
gtcaacattgaggaggggctggggaagtcctggtggaccttgaggaagacttgttttctg
atcgtggaacacaattggtttgagactttcatcatcttcatgatcctcctgagcagtggg
gccctggcttttgaggacatttacatagaacagaaaaaaaccatccggaccatcctggaa
tatgcagacaaggtcttcacttacattttcatcctggagatgctgctgaagtggtgtgct
tatggctttgtcaagttcttcaccaacgcctggtgctggttggacttcctcatcgtggct
gtctcattagtcagccttatagctaatgccctgggctactcggaactaggtgccataaag
tcccttaggacactaagagctttgaggcctttaagagcgttgtcccgatttgaggggatg
agggtggttgtcaacgccttggttggggcaatcccttccattatgaatgtcttgttggtc
tgccttatcttctggctgattttcagcattatgggggttaacctgtttgctgggaaatac
cattactgctttaatgaaacagctgaggagcgttttgagatagacattgtgaacaacaag
acagactgtgaagctctgatgccacccaactccaccgagatccgctggaagaacgtgaag
attaactttgacaacgttggggcaggatacctggctcttctgcaggttgctactttcaag
ggctggatggacatcatgtatgcagcagtggactccagaaagcaagaagagcagcccaag
tatgaggacaacatttacatgtacatctactttgtgatcttcatcatcttcggctccttt
ttcaccctcaacttgttcattggtgtcatcattgacaacttcaatcaacagaagaaaaag
tttggaggtcaagatatttttatgacagaagaacaaaagaagtactataatgccatgaaa
aaactgggctcaaagaagcctcaaaaacctattccccgacctctgaaccgcatccaagga
gctgtctttgactttgtcactcagcaagcgtttgacattgtcatcatgatgctcatttgc
ctcaacatggtgaccatgatggtggagacggacacccaaagcaagaagatggaggacatc
ctttactggatcaactttgtgtttgtcatcttcttcacctgtgagtgtgtgctgaagatg
ttcgccttacggcactattatttcaccatcgggtggaacatttttgacttcgtggttgtg
attctgtccatcgtgggaatgttcctggctgaaatcattgagaagtactttgtgtcaccc
actctgttccgagtcatccgcctggcgcgcatcggccgcatcctgcgcctgatcaaaggg
gccaaagggatccgcacgctgctctttgccttaatgatgtccctgcctgccttgttcaac
atcggcctcctgctcttcctggtcatgttcatcttctccatctttggcatgtccaacttt
gcctacgtcaagcacgaggccggcatcgatgacatgttcaactttgagacctttggcaac
agcatgatctgcctgttccagatcaccacgtcggcggggtgggatgggctgctcctgccc
atcctcaaccggcccccggactgtgacctggagaaggagcaccccgggagtggctttaag
ggggattgtgggaacccttcggtggggatatttttctttgtcagctacatcatcatctcc
ttcctgatcgtggtcaacatgtacattgccatcatcctggagaacttcagcgtggccacg
gaggagagcgccgacccgctgagcgaggacgacttcgagaccttctatgagatctgggag
aagtttgaccctgatgccacccagttcatcgagtacagcaagctggcagactttgctgat
gctttggaacatcctctccgcgtcccgaaacccaacaccatcgaactcatcgccatggac
ctgcctatggtcagtggagacaggatccactgtttagacatcctgtttgccttcaccaaa
cgtgtcctgggggacagcggagagctggatatactgaggcaacagatggaggaaagattt
gtggcatccaacccttccaaagtgtcttatgagcccatcacgaccaccctgcggcgcaag
caggaggaggtgtcggccgtggtgatccagagggcttacagggctcgtctggcacgacgg
ggcttcatcagccgcaggcccgtggccaccaagctggagaatggaggagccaacagggag
aaaaaagaagggaccccctcgacagcctccctgccctcctatgacagtgtcaccaaaccc
gagaaggagaaacagcaacgggcagaggaagggaaacgggaacgagccaaaaggcaaaaa
gaggtcagggaatccaagtgttga
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