Chaetura pelagica (chimney swift): 104385835
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Entry
104385835 CDS
T08631
Symbol
PRPF4
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein Prp4
KO
K12662
U4/U6 small nuclear ribonucleoprotein PRP4
Organism
cpea
Chaetura pelagica (chimney swift)
Pathway
cpea03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cpea00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
104385835 (PRPF4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cpea03041
]
104385835 (PRPF4)
Spliceosome [BR:
cpea03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
104385835 (PRPF4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40_Prp19
WD40
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_EML_2
EIF3I
Beta-prop_CAF1B_HIR1
WDR55
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_TEP1_2nd
Beta-prop_WDR75_1st
ANAPC4_WD40
PRP4
Beta-prop_EML
WD40_MABP1-WDR62_1st
NBCH_WD40
WDR90_beta-prop_4th
Beta-prop_SCAP
Beta-prop_TEP1_C
Beta-prop_EIPR1
Beta-prop_DCAF4
Beta-prop_RIG_2nd
Beta-prop_IFT122_1st
Beta-prop_Vps41
Beta-prop_IFT140_1st
WD_LRWD1
WD40_like
WD40_RFWD3
Beta-prop_WDR35_TULP_N
Beta-prop_WDR19_1st
Beta-prop_WDR11_1st
Motif
Other DBs
NCBI-GeneID:
104385835
NCBI-ProteinID:
XP_009992636
LinkDB
All DBs
Position
Unknown
AA seq
559 aa
AA seq
DB search
MARPSRMRVPGLVSGPCPRFPVPGSRFWGPPGPAAPTNTEHPAFASQAAKPKPPEEGEAP
PPKRAPIFYGSLEEKERERLAKGEPGLLGKEGMKAALEAGNINISSGEVFDLEDHMSERQ
AEVLAEFERRKRARQINVSTDDSEVKACLRALGEPITLFGEGPAERRERLRNILSVVGTD
ALKKTRKDDDRSRKSKDEYQQTWYHEGPRSLKTARLWLANYSLPRAVKRLEEARLLKEIP
EATRTSQKQELHKSLRSLNNFCSQIGDDRPLSYCHFSPNSKLLATACWSGLCKLWSVPDC
NLVHTLRGHSTNVGAIVFHPKATVSIEKKDVNLASCAADGSVKLWSLESDEPVADIEGHS
MRVSRVMWHPSGRFLGTTCYDHSWRLWDLEAQEEILHQEGHSKGVYDIAFHTDGSLAGTG
GLDAFGRVWDLRTGRCIMFLEGHLKEIYGINFSPNGYHVATGSGDNTCKVWDLRQRKCIY
TIPAHQNLVTGVKFEPNHGNFLLTGAYDNTAKIWTHPGWSPLKTLAGHEGKVMGLDISLD
GQLIATCSYDRTFKLWTAE
NT seq
1680 nt
NT seq
+upstream
nt +downstream
nt
atggctcgtccctcccggatgcgggtccccggtctggtgtcgggtccctgtccccggttc
ccggtccctggttcccggttttggggtcccccgggcccggctgctccgaccaacactgaa
catcccgcctttgcctcccaggccgccaagcccaagccccccgaggagggcgaagctccc
ccgcccaagagagcccccatcttctacggcagcctggaggagaaggagcgggagcgcctg
gccaagggggagccggggctgctggggaaggaggggatgaaggctgcgctggaggccggg
aacatcaacatcagcagcggtgaggtctttgacctggaggaccacatgagcgagcggcag
gccgaggtgctggcggagtttgagcgcaggaagcgagcgcggcagatcaacgtgtccacg
gacgactcggaggtcaaggcctgtctgcgcgcgctcggggagcccatcacgctcttcgga
gaggggcctgcagagaggagggagaggctgagaaatatcctttcagtggttggcacagat
gcattgaaaaagacaaggaaagatgatgacaggtccagaaaatccaaggacgagtatcag
caaacctggtaccacgaaggaccacgcagtctgaagacagcaaggctgtggctggccaac
tactcactccccagggcagtgaagcggctggaggaagctcgtctgctcaaagagatccca
gaggcaaccaggacatcacagaaacaggagctgcacaaatccctgcgatccttgaataac
ttctgcagccagatcggagacgatcgcccactgtcctactgccacttcagccccaattcc
aaactccttgccacagcctgttggagtggcctgtgcaagctctggtctgtgcctgactgc
aaccttgttcacaccttacgaggacatagcaccaacgtaggagcaatagtgttccatccc
aaagccactgtctccatagagaagaaggatgtcaacctggcctcgtgtgctgctgatgga
tccgtcaaactctggagcctggaaagtgatgaaccagtggcagatattgaaggacacagc
atgagagtgtcacgtgtgatgtggcacccatctgggaggttcctgggcacgacctgctac
gatcactcgtggcgcctgtgggacctggaagctcaggaagagattctgcaccaggagggg
cacagcaaaggggtctatgacattgcctttcacaccgacgggtctctggccgggacggga
ggtctggatgcttttggccgggtgtgggacttgcgcacggggcgctgcatcatgttcctg
gagggccacctgaaggagatctacgggatcaacttctccccaaatgggtaccacgttgca
actggcagtggtgacaacacgtgcaaggtgtgggacctccgccagaggaagtgcatctac
accatccctgcccaccagaacctggtgaccggcgtgaaattcgagcccaatcacgggaac
ttcctgctcacgggcgcctacgacaacacggccaagatttggactcaccctggctggtcc
cccctgaaaaccctggctggtcatgaggggaaggtgatgggactggacatctcccttgat
ggccagctgatagcaacctgctcctacgacagaaccttcaagctgtggacagcagagtag
DBGET
integrated database retrieval system
