Chaetura pelagica (chimney swift): 104386068
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Entry
104386068 CDS
T08631
Name
(RefSeq) collagen alpha-1(XVIII) chain-like
KO
K06823
collagen type XVIII alpha
Organism
cpea
Chaetura pelagica (chimney swift)
Brite
KEGG Orthology (KO) [BR:
cpea00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
cpea04147
]
104386068
00535 Proteoglycans [BR:
cpea00535
]
104386068
00536 Glycosaminoglycan binding proteins [BR:
cpea00536
]
104386068
Exosome [BR:
cpea04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
104386068
Proteoglycans [BR:
cpea00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
104386068
Glycosaminoglycan binding proteins [BR:
cpea00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
104386068
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
Fz
Laminin_G_3
Laminin_G_2
Motif
Other DBs
NCBI-GeneID:
104386068
NCBI-ProteinID:
XP_009992902
LinkDB
All DBs
Position
Unknown
AA seq
1215 aa
AA seq
DB search
MDQQLPGTGTTEDQQLPGTGTTEDQQLLEMVTTEDQQLLKTRTSEDPQLLGTGTAKNPQL
LGTGTTEDQQLPGTGTTEDQQLLEMVTTEDQQLLKTRTSEDPQLSGTVTTEDPQLPGTET
PAATWVSLQRPAGPRPGSAPFPFSAGDSTHERVVPPRRYPGALPTPPNLRQGTGHQGLAL
ASTKGSQSPPVPDGRAATGVDPSLADTSSPLQFDLLTAAAGLESSFPGLMPPAGHCLPIP
THLPFCRVLGTNRFRSPNYLGQGSEAEIRVALHEWEGLLESRCHRYVEWFLCLLLLPGCS
TSVPVTPPPCQGFCEAVRDLCWMHLASGHLPLPCDALPKEDEGYSCVFVNASAENPSTEV
SLLELIGDPPPEEILKIYGPDNNPGYVFGPNANTGQVARYHLPNPFYRDFSLLFHIQPTT
PRAGVLFAVTDSSQSIIYVGVKLSELRAGKQQIIFYYTEPGSSSSYAAATFTVPTLLNQW
TRFAISVEEEEVTLYLDCEEHERVRFERSPDEMELQKGSGLFVAQAGGADPDKYQGVIAD
LKLRGDPRAAERQCEEEEDDTEEEVSGDFGSGAGGGHQQPSGKDGGVPGLVDAVPVTSPP
VAGGGGMRSSGGSSQQAERTRAEETRQVSPGGTSSKGEKGEKGEPGLKGDSGTGSVKGEK
GEKGELGVKGSAGFGYPGSKGQKGEPGEPGPPGTLLQHTDGSLVEQVTGPPGPPGKDGAP
GRDGEPGDPGEDGKPVSVGRRGPPGPPGPPGLPGPSSKRDKLTFIDMEGSGFDGDLEGLR
GPRGPPGPPGPPGVPGLPGEPGRFGMNQTDLLGLPGLPGRDGMPGPPGPVGPQGPPGRDG
APGQPGPKGERGDVGDLGLPGAPGPKGSKGETGPAGPPGEAGLAGLPGPMGPRGPPGPPG
PPGPRGSGYEAGFGDMEGSGLPFTASSPGPEGPQGVPGLPGVKGEVGSPGQPGLPGLKGD
AGVPGVDGRPGLEGFPGPQGPKGDRGSPGEKGERGQDGVGLPGPPGPPGPPGQVIAVSSE
DKSLLALPGPEGRLGHAAFPGPVGPKGERGSSGPPGSPGLKGEKGEPGVIISPDGTVVTA
KVKGEKGEPGLRGPTGPTGPQGRAGMKGEIGFPGRPGRPGMNGLKGEKGDPADVSSLLGL
QGPPGPPGPPGPPGPPGSIVYDNRNAFSDSGHPALPAFPGFPQFPGQKGEKGDAGAPGPP
GHFPYDPSRFGANLR
NT seq
3645 nt
NT seq
+upstream
nt +downstream
nt
atggaccagcagctcccaggaacaggtaccaccgaggaccagcagctcccaggaacaggt
accactgaggaccagcagctcctagagatggtgaccactgaggaccagcagctcctaaag
acaaggacctctgaggacccacagctcctggggaccgggaccgccaaaaacccacagctc
ctggggacagggaccaccgaggaccagcagctcccaggaacaggtaccactgaggaccag
cagctcctagagatggtgaccactgaggaccagcagctcctaaagacaaggacctctgag
gacccacagctctctgggacagtgaccactgaagacccacagctcccagggacagagacc
cccgcagcaacctgggtgtccttgcagagaccagcaggtccccggccaggtagtgcccct
tttcctttctcagcaggtgacagtacccacgagcgggtggtgccgccccgacgctacccg
ggagcactgcccaccccaccgaacctgaggcaaggcactggccaccaggggctggccctg
gccagcaccaagggcagccagagccctcctgtgcccgacgggagggcggctactggtgtg
gatccttctctggccgacacctccagtcctctccagtttgatttactaaccgccgcggcg
gggcttgagtcctcctttcccggactgatgccaccagctgggcactgcctgcccatcccc
acccacctgcccttctgcagggtgctgggcaccaaccgtttccgatcccccaattacctc
gggcagggcagcgaggcagaaattcgggtggctttgcatgagtgggaggggctgcttgag
tcacggtgccatcgctacgtggagtggttcctctgcttgctcctgctccccggctgtagc
acctcggtccccgtaacccccccgccgtgccagggcttctgcgaggccgtcagagacctg
tgctggatgcacttggccagtgggcacctgcctctgccttgtgatgctctccccaaggag
gacgaagggtattcttgtgtctttgttaatgcttctgcagagaacccgagcactgaggtc
agcctcctggagctgattggagacccccctccagaggagatcctcaagatttatggcccc
gacaacaaccccggctacgtcttcggccccaacgccaacacggggcaggtggcccggtac
cacctgcccaaccctttctaccgggacttttccctcctgttccacatccaacccaccacc
cccagggctggggtcctctttgctgtcacggactcctctcagagcatcatctacgtgggg
gtcaagctctcggagctacgggcgggcaagcagcagatcatcttctactacacagagccg
ggctcctccagctcctatgctgcagccaccttcactgtgcccaccttgctcaaccagtgg
acacgctttgccatcagcgtggaggaggaggaggtcaccctctacctggactgtgaggag
cacgagcgagtccgcttcgagcgctccccggatgagatggagctgcagaagggctccggg
ctcttcgttgctcaagctggaggggctgacccagataaatatcagggggtgattgctgac
ctgaagctgcgaggggacccgcgggcagccgagcgccagtgcgaggaggaggaggatgac
acggaggaggaggtctcgggcgattttggcagcggggcaggaggtggacaccagcaaccc
tcggggaaagacgggggtgtcccagggctggtggatgctgtccctgtcacctctcccccc
gtggctggggggggtgggatgaggagcagtgggggctcctcgcagcaagccgagaggacc
agagcagaggagacacgacaggtctccccaggaggcaccagctccaaaggtgaaaagggg
gagaagggtgagcccggcctgaaaggggactcaggaacaggcagtgtcaagggtgaaaag
ggggagaaaggagaactgggcgttaagggcagtgctggctttggctatcccggctccaag
ggccaaaaaggagagccaggagagcccggcccccccgggaccctcttgcagcacacggat
ggctcgctggtggagcaggtcactggtcccccagggccaccggggaaggatggagcccct
ggcagggatggagagcccggcgatcccggcgaggacggcaaacccgtaagcgtggggcgc
aggggcccccctgggccccctggtcccccaggactgccaggaccctcatccaagcgtgac
aaactgaccttcatcgacatggagggctctggctttgatggtgacctggagggtctgcgg
ggtccacgggggccacctggtcctccagggccacccggcgtgcccggtttgccaggagaa
ccaggaaggtttgggatgaaccaaacagacctgctgggactgccagggctgccaggcagg
gatgggatgcccgggcccccagggccagtgggtcctcagggtcctcctggaagagatggg
gcacctgggcagccagggcccaaaggagagcggggtgacgtgggtgaccttggcctccct
ggtgcaccaggacccaagggcagcaaaggagaaacaggaccagcaggacccccaggagaa
gcagggttagctggccttcccgggcccatgggaccccgagggccaccagggccacctggc
cccccaggaccacgagggtcgggctacgaggctggatttggtgacatggagggctcgggg
ctgccgttcactgccagctcccccggacctgaagggccacagggggtgccaggactgcca
ggggtgaagggggaggttggcagccccgggcagcctggcttgccaggactgaagggagat
gctggtgtgcctggtgtggatggccgacctggcctggaaggcttcccaggaccacaggga
cccaaaggtgacagaggcagccctggtgagaagggagagcgaggccaagatggtgtggga
ttgcctggcccccctggtccacctggtccccctggacaggtcattgctgtctcaagtgaa
gataagtctttgctggctttgcccggtccggagggcagactgggtcacgctgccttcccg
ggcccggtgggaccgaaaggagaacggggctcatctggtcccccaggctccccagggttg
aagggggagaagggggagcccggcgtcatcatcagccccgatgggaccgtggtcactgcc
aaggtgaaaggagagaagggcgagccagggctgcggggacccacgggacccacgggtccc
cagggacgagcagggatgaagggagagatcggcttcccgggcagacccggacgtcctggc
atgaacgggctgaagggtgagaagggtgaccctgctgatgtcagcagcctgctgggcttg
cagggtcccccaggaccaccaggtcccccgggccctcccgggccacccggcagcatagtc
tatgacaacaggaatgccttcagtgactctggccatcccgcactgcccgccttccccggt
tttcctcaatttccaggacaaaagggagagaaaggtgatgctggagccccaggcccccca
ggccacttcccctacgaccccagtcgctttggtgccaacctgcgg
DBGET
integrated database retrieval system
