Chaetura pelagica (chimney swift): 104386116
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Entry
104386116 CDS
T08631
Symbol
RC3H1
Name
(RefSeq) roquin-1
KO
K15690
RING finger and CCCH-type zinc finger domain-containing protein
Organism
cpea
Chaetura pelagica (chimney swift)
Brite
KEGG Orthology (KO) [BR:
cpea00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cpea03000
]
104386116 (RC3H1)
04121 Ubiquitin system [BR:
cpea04121
]
104386116 (RC3H1)
Transcription factors [BR:
cpea03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
104386116 (RC3H1)
Ubiquitin system [BR:
cpea04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
104386116 (RC3H1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Roquin_1_2-like_ROQ
ROQ_II
zf-RING_5
zf-RING_UBOX
zf-RING_2
zf-C3HC4_4
Prok-RING_4
zf-CCCH
zf-C3HC4_3
zf-C3HC4
zf-CCCH_UNK
zf-C3HC4_2
zf_CCCH_4
FYVE
zf-CCCH_4
Vesi_VP2
PaaA_PaaC
Baculo_IE-1
zf-RING_4
zf-RING_10
zf-RING_6
Motif
Other DBs
NCBI-GeneID:
104386116
NCBI-ProteinID:
XP_009992958
LinkDB
All DBs
Position
Unknown
AA seq
1112 aa
AA seq
DB search
MPVQAPQWTDFLSCPICTQTFDETIRKPISLGCGHTVCKMCLNKLHRKACPFDQTTINTD
IELLPVNSALLQLVGAQVPEQQPITLCSGAEDTKHYEEGKKCVEELALYLKPLSSARGVG
LNSTTQSVLSRPMQRKLVTLVHCQLVEEEGRIRAMRAARSLGERTVTELILQHQNPQQLS
SNLWAAVRARGCQFLGPAMQEEALKLVLLALEDGSALSRKVLVLFVVQRLEPRFPQASKT
SIGHVVQLLYRASCFKVTKRDEDSSLMQLKEEFRTYEALRREHDSQIVQIAMEAGLRIAP
DQWSSLLYGDQSHKSHMQSIIDKLQTPASFAQSVQELTIALQRTGDPANLNRLRPHLELL
ANIDPSPDAPPPTWEQLENGLVAVRTVVHGLVDYIQNHSKKGTDQQQPPQHSKYKTYMCR
DMKQRGGCPRGASCTFAHSQEELEKFRKMNKRLVPRRPLSASLGQLNEVGLPSGAILSEE
GVDLPNRKASALPNGTVTQLISRGTDSSYETALKPGKMDHLSSSAPGSPPDLLESAPKSS
ISALPVNPHPVPARAPTDLSSVSVTKQLQMVPRGSPYQQADMFYQDPRGAAPPFEPAPYQ
QGVYYPTQSMSRFVRPPPSAPEPGPPYLDPYPPYLQDRVVSPQYTQPQQYPMGQPIYPPH
YDSRRVYPPVQPYQREEIVRGSPVPIEIPQAAVSSYVPDSRERYQQTEAYCPVPPHLSQI
RPSCHRPHPSLDELHRRRKEIMAQLEERKVISPPPFAPSPTLPHPFHSEEFLDEDLKVTG
KYKGNDYSQYSPWSCETIGSYIGTKDAKPKDVAARSVEMANVDSKAMRDQRLDMQRRAAE
TGDDDLIPFGDRPTVSRFGAISRTSKAMYQNSGPMQAMAVQGATTKPIISDYNLYGTHSG
WGGSPYSPHQTIPSQGRFNDRERLSMSDVPGHGKQLPSAEREQQLRMELQQVDHQISQQT
QMRGLEAVSNRLLLQREATTLAGQPQPPPPPPKWPGMISSEQLSLELHQVEREIGKRTRE
LSMESQSSLDIKNKLGTTKQTENGQLEQQSKVPAEDLALAFSSDVPNGSALTQENIGLLS
NKTSSLSLSEDSEGGGDSHDSQRVGVTPTSAP
NT seq
3339 nt
NT seq
+upstream
nt +downstream
nt
atgcctgtacaagctccacagtggacggattttctctcctgcccaatttgcacacagact
tttgacgaaacaatccggaagcccatcagcttgggttgtggccacactgtctgcaagatg
tgtctcaacaagctccaccgtaaggcatgtccttttgaccagaccactatcaatacagac
atcgagctccttcctgtgaactcggccttgctgcaactagtgggtgctcaggttccggag
cagcagccaattactttatgtagtggagctgaagataccaagcattatgaggagggcaaa
aaatgtgtggaagaactagcattgtacctcaaaccactcagcagcgcaagaggtgtgggt
ctcaacagtactactcagagtgtgctaagtcgtcccatgcagaggaaacttgtgacatta
gttcattgccagctggtggaggaggaagggcggatcagagctatgcgtgcagcacggtcg
cttggtgaaaggacagtcacagagctcattcttcagcatcaaaatcctcagcagctctct
tccaacctctgggctgcagtgagagccagaggatgccagttccttggaccagcaatgcaa
gaggaggctttaaagctggttctgctggctctggaagatggatctgctttgtcacgaaag
gtcttggttctctttgtggttcagaggctggagccacgatttcctcaggcttctaaaact
agcattgggcatgttgtccagcttctttacagagcctcctgcttcaaggtgacaaagcga
gatgaggattcctccctgatgcaactgaaggaagaatttcggacttatgaagctctgaga
agggaacacgattcccagatagttcaaattgctatggaagcaggtttacgcatcgcaccg
gatcagtggtcctcactgttatatggagaccagtctcacaaatcccacatgcaatctatc
attgacaagttgcagaccccagcctcatttgcacagagtgttcaggaattaactattgct
cttcagaggactggagatccagctaacctgaatcgtcttcgacctcacctagagctcctg
gcaaatattgatcccagtccagatgctccacctccaacatgggaacaactggaaaatgga
ctagttgctgtgaggactgtggttcatggcttagttgattatatccagaatcacagcaag
aaaggaacagatcagcaacagcctccccagcacagcaagtacaagacgtacatgtgccgg
gacatgaaacagagaggaggatgcccccgaggggccagctgcacctttgcacattcacag
gaggaactagaaaaattccgtaaaatgaacaagcgtctggttcccagaagacccctgagt
gcctccctgggccagctaaatgaggtgggcctgccttcaggagctatcctctcagaggaa
ggagtggacttgcccaataggaaagcttctgctctgccaaacggaactgtgacgcaactg
atttctcgagggactgactccagttatgaaactgctctgaaaccagggaaaatggatcat
cttagcagcagtgcccctggatcccctcctgacttgctggaatctgccccgaagagttca
atctctgccttaccagtgaaccctcatcctgtgcccgctcgggcaccaacagatctgtct
tcagtgtctgtcaccaagcagctgcaaatggtaccacgagggtctccatatcagcaagca
gatatgttttaccaggatcctaggggagctgccccaccatttgagccagcaccctaccaa
caaggagtttattatcccactcagtccatgtctcgctttgtccgacctcctccatcagcc
cctgaacctggtccaccttatctagacccttacccaccctaccttcaggaccgtgtggtg
agcccacagtacacgcagccgcagcagtatcccatgggacagcccatatacccaccacac
tacgacagccgtcgtgtgtatcctcctgttcagccgtaccagcgagaggagattgtccga
ggaagccctgtacccattgaaattccacaagcagctgtatcttcctacgtacctgattcc
agggagagataccagcaaacggaggcttattgcccagtgcctccacatctcagtcagatc
agaccttcgtgccacaggccacatcccagcctggacgaacttcaccgacgaagaaaagag
atcatggcccagttagaagagaggaaggtgatttctccacctccttttgcaccctcacca
accttgcctcatccttttcattcagaggagttcttggatgaagacctgaaggtaactggg
aaatacaaaggaaatgactacagccagtactctccctggtcctgtgaaaccatcggctcc
tacattggaaccaaagatgcaaaacccaaagatgtggcagcaaggagtgtggagatggcg
aatgtagatagtaaagccatgcgtgaccagcggttagacatgcagcgaagagcagcagag
actggtgatgatgacctcattccatttggagaccgaccaactgtgtcgagatttggggct
atctctcgtacttccaaagcgatgtaccagaattccggtcccatgcaggccatggcggtt
cagggagctaccaccaaacctatcatttcagactacaatctttatggaactcacagtggc
tggggaggctctccatattctcctcatcaaactataccttctcagggacgtttcaatgac
agggagagactgtccatgtcagatgtgcctggtcatgggaaacagttgccctcagcagag
cgagagcagcagctgcgcatggagctgcagcaagtagaccatcagatcagccagcaaaca
cagatgcgaggactagaggctgttagtaacaggctgctgttgcagagggaggcgactacc
ctggcaggccaaccacagcccccacccccacctcccaagtggcctgggatgatctcaagt
gagcagctgagcttggagctacaccaggtggaaagggaaattgggaagagaacccgtgag
ctgagcatggagagccaatcttcactggatataaaaaacaaactgggcaccactaaacag
actgaaaatgggcaattagaacagcaaagcaaggttccagctgaggacctcgcactggca
ttcagtagtgatgttccaaatggatcagccttgacacaagagaacattggcctcctgtca
aacaagacatcatctctcagcctgtcagaggactcagagggaggaggagacagccacgac
tcccagagagtgggagttacacccacgtctgctccatga
DBGET
integrated database retrieval system
