KEGG   Chaetura pelagica (chimney swift): 104386546
Entry
104386546         CDS       T08631                                 
Symbol
SNRNP40
Name
(RefSeq) U5 small nuclear ribonucleoprotein 40 kDa protein
  KO
K12857  Prp8 binding protein
Organism
cpea  Chaetura pelagica (chimney swift)
Pathway
cpea03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:cpea00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    104386546 (SNRNP40)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:cpea03041]
    104386546 (SNRNP40)
Spliceosome [BR:cpea03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U5 snRNP specific factors
    104386546 (SNRNP40)
 Complex C
   U5 SnRNP specific factors
    104386546 (SNRNP40)
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_WDHD1_1st WD40_CDC20-Fz Beta-prop_TEP1_2nd WDR55 EIF3I Beta-prop_CAF1B_HIR1 Beta-prop_EML_2 WD40_MABP1-WDR62_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_TEP1_C Beta-prop_WDR75_1st Beta-prop_EML NBCH_WD40 WDR90_beta-prop_4th ANAPC4_WD40 Beta-prop_EIPR1 Beta-prop_SCAP WD40_MABP1-WDR62_1st Beta-prop_SPT8 Beta-prop_IFT122_1st Beta-prop_RIG_2nd Beta-prop_DCAF4 WD40_RFWD3 Beta-prop_IFT140_1st Beta-prop_Vps41 Beta-prop_WDR19_1st Beta-prop_WDR75_2nd eIF2A Beta-prop_WDR35_TULP_N Beta-prop_NWD2_C Beta-prop_HPS5 Cytochrom_D1 WDR54 WD40_like WD_LRWD1 Beta-prop_Nup120_160 PROPPIN
Other DBs
NCBI-GeneID: 104386546
NCBI-ProteinID: XP_009993465
LinkDB
Position
Unknown
AA seq 349 aa
MASRCARGRLDWTHEGVLAIPWGVPLVLSLHLLSCCLLQGPPRCSSLQAPIMLLSGHEGE
VYCCKFHPNGNTLASAGFDRLILLWNVYGDCDNFATLKGHSGAVMELHYNTDGSMLFSAS
TDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLWDIRKKAAVQ
TFQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVTGLSLSSEGS
YLLSNAMDNTVRIWDVRPFAPKERCVKIFQGNIHNFEKNLLRCSWSPDGSKIAGGSADRF
VYVWDTTSRRILYKLPGHAGSVNELAFHPEEPIILSASSDKRLYMGEIQ
NT seq 1050 nt   +upstreamnt  +downstreamnt
atggcctcacgttgtgccaggggacgcttagattggacccatgagggggtcctggccata
ccctggggggttccccttgtgttgtcccttcacctgctctcctgttgcctcctgcagggc
cccccgcgctgctcctccctgcaggcccccatcatgctgctctcggggcacgagggggag
gtgtattgctgcaagttccaccccaatggcaacaccttggcctctgctggcttcgacagg
ctgatcttgctgtggaatgtctacggggactgtgacaactttgccaccctgaagggacac
agcggggcagtcatggagctgcactataacacagatggcagcatgcttttctcagcatcc
actgacaaaaccgtggctgtgtgggacagtgagactggagagagggtgaagaggctgaag
ggccacacgtcctttgtcaactcctgctacccggcgcggcggggaccgcagctggtctgt
accggcagcgacgacgggacggtcaagctgtgggatatcaggaaaaaagctgctgtccag
acattccagaacacataccaggtcttggctgtcaccttcaatgacaccagtgatcagatc
atatctggaggcatcgacaacgatattaaggtttgggaccttcgccagaacaagctcacc
tacaccatgaggggacatgcagactcagtgactggcctcagcctgagctcagaaggctcc
tacctgctctccaatgccatggacaacacagttcgcatctgggatgtgcggccctttgcc
cccaaagagagatgtgtgaagatttttcaggggaacatacataattttgaaaagaatctt
ctgaggtgctcttggtccccagatggaagtaaaatagcagggggatctgctgacaggttt
gtctatgtgtgggacaccacatccaggaggattttgtacaagctgccaggccatgctgga
tcagtgaatgagctggctttccatccagaggaacccattatcctctctgcatccagtgac
aagagactgtacatgggggagatccagtga

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