Chaetura pelagica (chimney swift): 104387176
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Entry
104387176 CDS
T08631
Symbol
POLR2B
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB2
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
cpea
Chaetura pelagica (chimney swift)
Pathway
cpea03020
RNA polymerase
cpea03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cpea00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
104387176 (POLR2B)
09124 Replication and repair
03420 Nucleotide excision repair
104387176 (POLR2B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cpea03021
]
104387176 (POLR2B)
03400 DNA repair and recombination proteins [BR:
cpea03400
]
104387176 (POLR2B)
Enzymes [BR:
cpea01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
104387176 (POLR2B)
Transcription machinery [BR:
cpea03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
104387176 (POLR2B)
DNA repair and recombination proteins [BR:
cpea03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
104387176 (POLR2B)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_4
RNA_pol_Rpb2_3
RNA_pol_Rpb2_5
DUF5817
Motif
Other DBs
NCBI-GeneID:
104387176
NCBI-ProteinID:
XP_009994176
LinkDB
All DBs
Position
Unknown
AA seq
1165 aa
AA seq
DB search
MQYDEDDDEITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDL
QAEAQHASGEVEEPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVD
ITKTVIKEGEDQLQTQHQKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFII
NGSEKVLIAQEKMATNTVYVFAKKDSKYAYTGECRSCLENSSRPTSTIWVSMLARGGQGA
KKSAIGQRIVATLPYIKQEVPIIIVFRALGFVSDRDILEHIIYDFEDPEMMEMVKPSLDE
AFVIQEQNVALNFIGSRGAKPGVTKEKRIKYAKEVLQKEMLPHVGVSDFCETKKAYFLGY
MVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKFIDRGK
DFNLELAIKTRIISDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRLNS
PIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSPILEFLEE
WSMENLEEISPAAIADATKIFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSEVSMIRDI
REREIRIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASGVVEYIDT
LEEETVMLAMTPDDLQEKGVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSA
MGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAIASYTG
YNQEDSVIMNSVDRGFFRSVFYRSYKEQESKKGYDQEEVFEKPTRETCQGMRHAIYDKLD
DDGLIAPGVRVSGDDVIIGKTVTLPENEDELESTNRRFTKRDCSTFLRTSETGIVDQVMV
TLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINP
HAIPSRMTIGHLIECLQGKVSANKGEIGDATPFNDAVNVQKISNLLSDYGYHLRGNEVLY
NGFTGRKITSQIFIGPTYYQRLKHMVDDKIHSRARGPIQILNRQPMEGRSRDGGLRFGEM
ERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCGIMAIANTRTHTYECRGCRNKTQISLV
RMPYACKLLFQELMSMSIAPRMMSV
NT seq
3498 nt
NT seq
+upstream
nt +downstream
nt
atgcagtatgatgaggacgacgatgagatcacccccgacctgtggcaggaggcctgctgg
atcgttattagctcttattttgatgaaaagggtttagtcagacaacagttggattctttc
gatgagtttattcagatgtctgtgcagagaattgttgaagatgctccaccaattgattta
caagctgaagcccagcatgcctcaggagaagtggaagagccacctcggtatctattgaag
tttgaacaaatctacctctccaagcctacacattgggaaagagacggagcaccctcacca
atgatgcccaacgaagccaggctgagaaatctgacgtattcagcccctttgtatgtggat
ataactaaaacagttattaaagaaggggaggatcagttacagacacagcatcagaaaact
tttataggaaaaattcctattatgttacgttcaacatactgtttattgaatggcttgacg
gaccgtgatctttgtgaactgaatgaatgcccacttgatcctgggggctactttatcatt
aatggatcagaaaaggttctgattgctcaagagaaaatggctacaaatacagtgtatgtg
tttgcaaagaaagattcaaaatatgcctacacaggagagtgtagatcttgtctggaaaat
tcctctcgaccaacaagtactatatgggtcagcatgcttgccagaggtggacagggtgca
aagaagagtgctattggtcagcgcattgtcgcgactttgccatatatcaaacaagaagtc
cccatcatcattgtcttccgtgcactgggctttgtgtctgacagggacattttggagcac
atcatatatgattttgaagacccagaaatgatggaaatggttaagccttctctggatgaa
gcatttgtcattcaggagcaaaatgttgctctgaacttcattggatcgagaggtgcaaag
ccaggtgtcaccaaagaaaagagaatcaagtatgctaaagaagtcttgcagaaagaaatg
ctcccacatgttggcgtcagtgacttctgtgaaaccaaaaaggcgtattttctagggtac
atggttcatagattgttgctggcagcactgggaagaagagagcttgatgacagagatcat
tatggcaacaaaagactggatcttgctgggccactgttagctttcctgttcagaggaatg
tttaagaatttgctgaaggaagtgagaatatatgcacagaagtttattgacagagggaaa
gatttcaacttggaactggcaattaaaacaagaattatttcagatgggttgaagtattca
ctggccactggaaactggggtgaccagaagaaagctcatcaggccagagcaggagtatct
caggtgttaaaccgtctgacttttgcatctacgctctcccacctgagacgcctgaactct
cccatcggtagggatggtaaactggcaaagcccagacagctgcacaacacactgtggggg
atggtttgccctgctgagactccagagggtcatgcagtaggacttgtgaagaacttagca
ctgatggcttacatttctgtggggtctcagccatccccaattttggaattcttggaagag
tggagtatggaaaacctggaagaaatatctccagcagcaatagctgatgctaccaagatc
tttgtcaatggctgctgggtaggaatacacaaagatccagagcagctcatgaatacccta
aggaagctccgtcgtcagatggacatcattgtatcagaggtctcaatgattagggatatt
cgtgagcgagaaatccgcatctatactgacgcaggcagaatttgtcgaccccttttaatt
gtggaaaaacagaagctgctcttgaagaaaaggcatattgaccaactgaaggaacgagag
tataacaattacagttggcaggatctcgtggccagtggtgtggtagagtacattgataca
ctggaagaggagacagtgatgctggcaatgactccagatgacttgcaagagaagggtgtg
gcatattgttccacatacacacactgtgagattcacccatctatgatcctgggagtgtgt
gcatctattatccctttccctgatcacaaccagtctcccaggaacacataccagtctgct
atggggaaacaggctatgggagtttacattacgaacttccatgttcgtatggataccttg
gcacatgtgttgtattatcctcagaagcctcttgtaacaactcgctccatggagtacttg
agatttagagagttaccagcaggtatcaactcgattgtggccattgcatcatacacaggc
tataaccaggaagactctgtcatcatgaactctgtggacagaggctttttcagatctgtg
ttctatcgctcatacaaagagcaagagtctaaaaaaggttatgaccaagaggaagttttt
gaaaagcctacacgtgaaacttgccaaggtatgagacatgcaatctatgacaaacttgat
gatgatggtttgatagcacctggggtacgtgtgtctggggatgatgtcatcattggcaaa
acagtaactctgccagaaaatgaagacgagctggaaagcactaacaggcgtttcacaaag
agagactgtagcactttcctgcgaaccagtgagactggtattgtagatcaggtcatggta
acccttaaccaggaaggatacaagttctgcaagattagggtacgctctgtaagaatccca
caaattggagataaatttgccagcagacatggtcagaaaggaacctgtggtatccagtac
agacaagaggatatgcccttcacctgtgaaggcatcacacctgatataattatcaacccc
catgccatcccttcccgtatgaccattggtcacttgattgagtgtcttcaggggaaggta
tctgcaaacaagggagaaattggtgacgctacgccctttaatgatgctgtcaacgtgcag
aaaatttccaatcttttatcagattatggctatcatctaagaggaaatgaggtcctctac
aatggcttcactggtcgaaaaatcacatcacagatcttcattggtcctacatactatcag
cggttgaagcacatggttgatgacaaaatccattctcgtgcaagagggccaatccagata
cttaatagacagcccatggaaggcagatctcgtgatggtggccttcgttttggagaaatg
gagcgagattgccagattgctcatggggctgcccagttcttgagagagagattgtttgaa
gcttcagacccataccaagtccatgtctgtaacctgtgtggaatcatggcgattgcaaac
acaaggactcacacctatgaatgccggggatgccgtaataaaactcagatatctttggtt
cgaatgccctatgcctgcaaactgctcttccaagaactgatgtctatgagtattgcacct
cgtatgatgagtgtttag
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integrated database retrieval system
