Chaetura pelagica (chimney swift): 104388113
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Entry
104388113 CDS
T08631
Symbol
PDZRN3
Name
(RefSeq) LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase PDZRN3
KO
K15682
ligand of Numb protein X 3/4 [EC:
2.3.2.27
]
Organism
cpea
Chaetura pelagica (chimney swift)
Brite
KEGG Orthology (KO) [BR:
cpea00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
cpea04121
]
104388113 (PDZRN3)
Enzymes [BR:
cpea01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
104388113 (PDZRN3)
Ubiquitin system [BR:
cpea04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Ligand of Numb proteins
104388113 (PDZRN3)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PDZ
PDZ_6
PDZ_2
Tricorn_PDZ
Motif
Other DBs
NCBI-GeneID:
104388113
NCBI-ProteinID:
XP_009995237
LinkDB
All DBs
Position
Unknown
AA seq
767 aa
AA seq
DB search
MGCSLCTLQKPEEQYKLLYEVCQVNGKDLSKATHEQAVEAFKTAKEPIVVQVLRRTPRTK
VFTPPHESQLVDVGTQTDITFEHIMALSKMGSPTPPVSVLDPYLLPEEXHGIHPSVHEYY
DPNDYMGGIHQEMDRDELELEEVDLHRVNSQDKLGLTVCYRTDDEDDMGIYVSEIDPNSI
AAKDGRLREGDRIIQINGIEVQNREEAVALLTSEESKNISLLVARPEIQLDEGWMDDDRN
DFLDDLHMDMLEEQHHQAMQFTASMLQQKKHEEDGGTTDTATILSNQHEKDSGVGRTDDS
TRNDESSEQENNADDHTTFSNTLGSQKKLTYSHDTLGSGDMQFSNESFISADCTDVDFLG
IPIDECERFRELLELKCQVKSANPYSLYYHSSTLDMSKSDQESVDRELEMLNEELRNIEL
ECLNIVRAHKMQQLKDQYREPWMLHNSGFRNYNTSIDVRRHELSDITELPEKSDKDSSSA
YNTGESCRSTPLTLEISPDNSLRRTAEGINCQGNEGAAAYSVSQKNVFASSESHESSTGK
CHASAKDPDLSKQLESKERKGSDGSKSPTHGQKSSGSYISPYHHSPYKHAHIPAHAQHYQ
SYMQLIQQKSAVEYAQSQMSLVSMCKDFNSSQSEPRMEWKVKVRSDGTRYITKRPVRDRL
LRERAIKIKEERSGMTTDDDAISEMKMEQRRRREFMMQSRLDCLKEQQGAEEKKEMNIIE
LSHKKMMKKRNKKIFDNWMTIQELLTHGTKSPDGTRVYNSFLSVTTV
NT seq
2304 nt
NT seq
+upstream
nt +downstream
nt
atgggctgcagcctgtgcacgctacagaagccagaggagcagtacaagttactgtacgaa
gtttgtcaggtcaatgggaaggatttatctaaagcaacacatgagcaggcagtggaagca
ttcaaaacagccaaggagcccattgtggtccaggtcctgaggagaactccacgcaccaag
gtcttcacccctcctcatgagtcccagctggttgatgtgggcacacagacagatatcact
tttgaacacatcatggctctgagcaagatgggctcacctactccacccgtctctgtgcta
gacccatacctcctacctgaagagtaacatggcatccatccatcagtgcatgaatactac
gacccaaatgactacatgggtggaattcatcaagaaatggaccgagatgagttggaatta
gaggaagtagatttacacagagtgaacagccaggacaagcttggccttaccgtatgttac
agaacagatgatgaagatgacatgggtatttatgtgagtgagattgatcccaacagtatt
gctgcaaaagatggtcgactccgagaaggggatcgtattattcagatcaatggcatagag
gtacagaaccgagaagaagctgtggcacttctcaccagtgaagaaagcaagaatatctcc
ttacttgttgcaagaccagaaattcagctggatgaaggatggatggatgatgacagaaat
gattttctggatgacttgcacatggacatgttagaggaacagcaccaccaggcaatgcag
ttcactgccagcatgcttcagcagaagaagcatgaggaggatggaggtaccacagacaca
gccactattctatctaaccagcacgagaaggacagtggtgtggggcgcacagacgacagc
actcgcaacgatgagagctccgagcaggagaacaatgcagatgatcacaccaccttctcc
aacactttagggagccagaagaagctgacctacagtcacgacaccctaggaagtggtgac
atgcagttcagcaacgaatcgtttatctcagctgactgcacagatgttgacttccttggc
atccccatagatgaatgtgagcgattccgggaactgctggagctgaagtgccaggtgaag
tctgccaacccatacagcctgtattatcatagcagcacgctggacatgagcaagagcgac
caagaaagtgttgacagagagctggagatgctgaacgaagagctgcgtaatattgagcta
gagtgcctgaatattgtcagagctcataaaatgcagcagttgaaagatcagtaccgggag
ccctggatgctccataacagcgggttccgcaactataacacgagcatcgatgttcgcagg
cacgagctctctgacatcacagagctcccagagaagtcagacaaggacagctccagtgca
tacaacacaggtgaaagctgccggagcacaccgctcaccctggagatctcccctgacaat
tcactgcgcagaactgcagaaggcattaactgtcagggcaatgagggggcagcagcatat
agtgtctcccaaaagaatgtatttgctagctcagaaagtcatgaatccagcactggtaaa
tgccatgcctctgctaaagatcctgacctgagcaagcagctggaaagcaaggagagaaaa
ggcagtgatggaagcaaaagccctactcatggtcaaaaatcttctggctcctatatctca
ccgtaccatcactctccatataagcacgctcatattcctgcccacgcacagcactatcag
agctacatgcagctgatccaacagaaatcagcagtggagtatgcacagagccaaatgagc
ctagtaagcatgtgcaaagactttaactcaagccagagtgaaccgaggatggagtggaaa
gtcaaggtgagaagcgatgggacccgctacattaccaagaggccggtgagggacaggctg
ctgagagaacgtgccataaagattaaggaggagcgcagtggtatgactactgacgatgat
gccatcagtgagatgaagatggagcagaggaggaggcgcgagttcatgatgcagagcagg
ttagattgcttaaaggaacagcaaggtgcagaagaaaagaaagagatgaatatcatcgaa
ctgagccacaaaaaaatgatgaagaagagaaataaaaaaatatttgacaattggatgaca
atccaagaactgctaacccatggaacaaagtcaccagatggcacacgggtgtacaattcc
ttcctgtcagtgactactgtataa
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